Entry - *188040 - THROMBOMODULIN; THBD - OMIM
* 188040

THROMBOMODULIN; THBD


Alternative titles; symbols

THRM
CD141 ANTIGEN; CD141


HGNC Approved Gene Symbol: THBD

Cytogenetic location: 20p11.21     Genomic coordinates (GRCh38): 20:23,045,633-23,049,672 (from NCBI)


Gene-Phenotype Relationships
Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
20p11.21 {Hemolytic uremic syndrome, atypical, susceptibility to, 6} 612926 AD 3
Thrombophilia 12 due to thrombomodulin defect 614486 AD 3

TEXT

Description

The THBD gene encodes thrombomodulin, an endothelial cell surface glycoprotein that forms a 1:1 complex with the coagulation factor thrombin (F2; 176930). Binding of thrombin to this high-affinity receptor alters its specificity toward several substrates, ultimately acting as an antithrombotic factor. The F2:THBD complex activates protein C (PROC; 612283) approximately 1,000 times faster than thrombin alone, and activated protein C degrades clotting factors V (F5; 612309) and VIII (F8; 300841). In addition, THBD can inhibit procoagulant functions of thrombin, such as platelet activation or fibrinogen clotting. THBD can also promote antithrombin III (SERPINC1; 107300) inhibition of thrombin. Thus, thrombomodulin converts thrombin into a physiologic anticoagulant (summary by Esmon (1987) and Anastasiou et al., 2012).


Cloning and Expression

Wen et al. (1987) presented the complete cDNA sequence of human thrombomodulin. The sequence encodes a 60.3-kD protein of 575 amino acids. The predicted protein sequence includes a signal peptide of about 21 amino acids, an amino terminal ligand-binding domain of about 223 amino acids, an epidermal growth factor (EGF) homology region (see 131530) of 236 amino acids, a serine/threonine-rich segment of 34 amino acids, a membrane-spanning domain of 23 amino acids, and a cytoplasmic tail of 38 amino acids. The EGF homology region consists of 6 tandemly repeated EGF-like domains. The organization of thrombomodulin is similar to that of LDL receptor (606945), and the protein is homologous to a large number of other proteins that also contain EGF-like domains, including factor VII (613878), factor IX (300746), factor X (613872), factor XII (610619), protein C, tissue plasminogen activator (173370), and urokinase (191840).


Gene Structure

Jackman et al. (1987) reviewed the structure of the thrombomodulin gene and commented on the lack of introns.


Mapping

By molecular hybridization to sorted chromosomes, Wen et al. (1987) localized the structural gene for thrombomodulin to chromosome 20. By in situ hybridization, Espinosa et al. (1989) localized the THBD gene to 20p12-cen. By FISH, Yasuda et al. (1993) assigned the THBD gene to 20p11, proximal to NEC2 (162151) and SSTR5 (182455) which are located at 20p11.2. By radiation hybrid mapping, Maglott et al. (1996) localized the THBD gene to a region corresponding to 20p11.2.


Gene Function

Ishii and Majerus (1985) demonstrated thrombomodulin in human plasma and urine. The physiologic significance of circulating and urinary thrombomodulin was obscure.

Malignant primary tumors of the pericardium such as primary pericardial mesothelioma are very rare. Thrombomodulin has been identified on the pleural mesothelioma cells. Okura et al. (1996) described the case of a 25-year-old man who was found to have a pericardial mesothelioma secreting thrombomodulin. Very little clot formation in the pericardial space may have been the result of the anticoagulant effect of thrombomodulin.

Using microarray technology to identify CLOCK (601851)-controlled genes in human and murine vascular endothelial cells, Takeda et al. (2007) found that thrombomodulin was upregulated by CLOCK in these cells. Thbd mRNA and protein showed a clear circadian oscillation in murine heart and lung. A heterodimer of CLOCK and BMAL2 (ARNTL2; 614517) bound directly to the E-box of the THBD promoter, resulting in activation. The phase of circadian oscillation of Thbd mRNA expression was altered by temporal feeding restriction in mice, suggesting that gene expression is regulated by the peripheral clock system. In addition, this circadian oscillation of Thbd was not seen in Clock mutant mice. The data suggested that there is a peripheral clock in vascular endothelial cells that regulates THBD gene expression, and that the oscillation of this expression may contribute to the circadian variation of cardiovascular events.

In in vitro cellular studies, Delvaeye et al. (2009) demonstrated that thrombomodulin binds to C3b (see 120700) and factor H (CFH; 134370) and negatively regulates complement by accelerating factor I (CFI; 217030)-mediated inactivation of C3b in the presence of cofactors. By promoting activation of the plasma procarboxypeptidase B (CPB2; 603101), thrombomodulin also accelerates the inactivation of anaphylatoxins C3a and C5a. Thus, thrombomodulin provides protection against complement activation.

As part of an effort to clarify the nomenclature for monocytes and dendritic cells (DCs) in blood, Ziegler-Heitbrock et al. (2010) reported that CD141 is a marker for 1 of 2 types of myeloid DCs. CD141-positive myeloid DCs represent an immature or precursor stage of circulating DCs.


Molecular Genetics

Thrombophilia Due to Thrombomodulin Defect

The role of thrombomodulin in thrombosis (THPH12; 614486) is controversial. Although there have been several reports of THBD mutations in patients with venous thrombosis, clear functional evidence for the pathogenicity of these mutations is lacking. In a review, Anastasiou et al. (2012) noted that thrombomodulin has a major role in capillary beds and that THBD variation may not be associated with large vessel thrombosis. It is likely that genetic or environmental risk factors in addition to THBD variation are involved in the pathogenesis of venous thrombosis. However, variation in the THBD gene may be associated with increased risk for arterial thrombosis and myocardial infarction. This association may be attributed to the fact that thrombomodulin modulates inflammatory processes, complement activity, and fibrinolysis.

Late fetal loss can be associated with placental insufficiency and coagulation defects. Thrombomodulin and the endothelial protein C receptor (EPCR; 600646) are glycoprotein receptors expressed mainly on the endothelial surface of blood vessels and also in the placenta; they both play a key physiologic role in the protein C anticoagulant pathway. Franchi et al. (2001) investigated the possibility that defects in these proteins play an important role in the pathogenesis of late fetal loss. They performed a case-control study in 95 women with unexplained late fetal loss (after 20 weeks); the control group comprised 236 women who had given birth to at least 1 healthy baby and had no history of late fetal loss or obstetrical complications. In the 95 patients, they found 5 mutations in the THBD gene and 2 in the EPCR gene; in the 236 control subjects, they found 3 mutations in the THBD gene and 1 in the EPCR gene. The relative risk for late fetal loss for carriers of mutation in either the THBD or EPCR gene was estimated by an odds ratio of 4.0.

To evaluate the contribution of THBD gene mutations to venous thrombosis, Faioni et al. (2002) examined 38 patients with recurrent, documented thrombotic events at a young age and a positive family history. Twelve individuals with low levels of soluble thrombomodulin in plasma were also studied. Two mutations were identified: -33G-A (188040.0004), in a severely thrombophilic patient, and D468Y (188040.0001). The allelic frequency of an ala455-to-val polymorphism (A455V; 188040.0008) was identical in patients and controls. Faioni et al. (2002) concluded that mutations in the THBD gene are a very rare cause of severe thrombophilia.

Tang et al. (2013) studied venous thrombosis in the Chinese population, examining 1,304 individuals diagnosed with a first venous thrombosis and 1,334 age- and sex-matched healthy participants. Resequencing of THBD in 60 individuals with venous thrombosis and in 60 controls, and a functional assay, showed that a common variant, c.-151G-T (188040.0010), in the 5-prime UTR significantly reduced the gene expression and could cause a predisposition to venous thrombosis. This variant was then genotyped in a case-control study, and results indicated that heterozygotes had a 2.80-fold (95% confidence interval = 1.88-4.29) increased risk of venous thrombosis. The THBD c.-151G-T variant was further investigated in a family analysis involving 176 first-degree relatives from 38 index families. First-degree relatives with this variant had a 3.42-fold increased risk of venous thrombosis, and their probability of remaining thrombosis-free was significantly lower than that of relatives without the variant. In addition, 5 rare mutations that might be deleterious were also identified in thrombophilic individuals by sequencing.

Susceptibility to Atypical Hemolytic Uremic Syndrome 6

In 7 (4.6%) of 153 patients with atypical hemolytic uremic syndrome (AHUS6; 612926), Delvaeye et al. (2009) identified 6 different heterozygous mutations in the THBD gene (see, e.g., 188040.0005-188040.0007). In vitro functional expression studies showed that cells transfected with mutant THBD were less effective in converting C3b to iC3b on the cell surface after complement activation, and were thus not as well protected against complement activation.


Animal Model

Isermann et al. (2003) found that disruption of the mouse thrombomodulin gene leads to embryonic lethality caused by a defect in the placenta. They showed that the abortion of thrombomodulin-deficient embryos is caused by tissue factor (134390)-initiated activation of the blood coagulation cascade at the fetomaternal interface. Activated coagulation factors induced cell death and growth inhibition of placental trophoblast cells by 2 distinct mechanisms. The death of giant trophoblast cells was caused by the conversion of fibrinogen to fibrin (see 134820) and subsequent formation of fibrin degradation products. In contrast, the growth arrest of trophoblast cells is not mediated by fibrin, but is a likely result of engagement of the protease-activated receptors PAR2 (600933) and PAR4 (602779) by coagulation factors. Isermann et al. (2003) concluded that their findings show a novel function for the thrombomodulin-protein C system in controlling the growth and survival of trophoblast cells in the placenta. This function is essential for the maintenance of pregnancy.


ALLELIC VARIANTS ( 10 Selected Examples):

.0001 RECLASSIFIED - VARIANT OF UNKNOWN SIGNIFICANCE

THBD, ASP468TYR
  
RCV000013551...

This variant, formerly titled THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT (614486), has been reclassified based on the findings of Nakazawa et al. (1999) and Kunz et al. (2002).

In a 45-year-old Hispanic man who developed a pulmonary embolism, Ohlin and Marlar (1995) identified a heterozygous 1456G-T transversion in the THBD gene, resulting in an asp468-to-tyr (D468Y) substitution between the transmembrane domain and the sixth EGF-like domain. He had decreased soluble THBD fragments in serum compared to controls. The patient's mother died suddenly, apparently of pulmonary embolus; his 23-year-old son, who had no history of thrombosis, was heterozygous for the mutation.

Nakazawa et al. (1999) demonstrated that the D468Y variant protein was expressed normally at the cell surface in COS-7 cells and had normal cofactor activity for activation of protein C. In addition, the Km and Vmax of the variant protein were similar to wildtype, casting doubt on its pathogenicity.

Faioni et al. (2002) identified a heterozygous D468Y substitution in 1 of 12 patients with thrombophilia and low serum THBD levels. The patient was a 52-year-old woman with deep vein thrombosis of the lower limb and a stroke. However, Faioni et al. (2002) noted that there is no evidence to support the frequent involvement of THBD mutations in large vessel thrombosis, if at all, and suggested that THBD defects be sought only for research purposes.

Kunz et al. (2002) found no abnormality in cell surface expression or thrombomodulin cofactor function in studies of the D468Y protein.


.0002 THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, ALA25THR
  
RCV000013552

In 2 unrelated patients with thrombophilia due to thrombomodulin defect (614486), Doggen et al. (1998) identified a heterozygous 127G-A mutation in the THBD gene, resulting in an ala25-to-thr (A25T) substitution. The patients were ascertained from a larger cohort of 104 patients with myocardial infarction. In a larger study of 560 men with a first myocardial infarction before the age of 70, Doggen et al. (1998) found that 12 were carriers of the A25T substitution. In a control group of 646 men, frequency-matched for age, 7 were carriers of the A25T substitution. The allelic frequencies were 1.07% among patients and 0.54% among controls, suggesting an odds ratio of 2.0. In patients below age 50, the predicted risk was almost 7 times increased (odds ratio, 6.5). In the presence of smoking or a metabolic risk factor, the predicted risk increased to 9-fold and 4-fold, respectively.

In a 42-year-old Swedish woman with thrombophilia due to thrombomodulin defect who developed a sagittal sinus thrombosis causing neurologic symptoms, Norlund et al. (1997) identified a heterozygous A25T mutation. She had been taking oral contraceptives for 18 years. Her unaffected 16-year-old daughter also carried the mutation. The substitution is located in a conserved residue in the N terminal, lectin-like extracellular domain of the protein, which may be involved in regulation of cell surface expression of the protein.

Kunz et al. (2002) found no abnormality in cell surface expression or thrombomodulin cofactor function in studies of the A25T protein.


.0003 THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, 1-BP INS, 1689T
   RCV000013553

In a man with thrombophilia due to thrombomodulin defect (614486) resulting in an occlusive myocardial infarction at age 52 years, Kunz et al. (2000) found a heterozygous frameshift insertion mutation, 1689insT, in the THBD gene. The mutation predicts an elongated gene product because of substitution of the last 12 C-terminal amino acids by 61 abnormal residues. Pedigree analysis suggested that a brother who had suffered a fatal myocardial infarction probably also carried the mutation. Known risk factors for myocardial infarction, including smoking, increased blood pressure, elevated triglycerides, and elevated cholesterol, were present in the proband and other family members. Carriers of the mutant allele expressed significantly lower amounts of thrombomodulin on the surface of their monocytes and lower levels of soluble thrombomodulin in plasma. Transfection of the mutation in COS-7 cells resulted in reduced cell surface expression of mutant THBD associated with impaired translocation through the endoplasmic reticulum/Golgi apparatus compared to wildtype. In addition, cells expressing abnormal thrombomodulin had a 2.5-fold reduced ability to accelerate the thrombin (F2; 176930)-mediated activation of protein C (PROC; 612283).


.0004 THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, -33G-A, PROMOTER
  
RCV001724979...

Ireland et al. (1997) identified a heterozygous -33G-A transition in the promoter region of the THBD gene adjacent to the TATA in 1 of 104 patients with myocardial infarction (614486) and in 1 control. Both individuals were of Asian origin.

Le Flem et al. (1999) identified a heterozygous -33G-A transition in the THBD gene in 2 (0.97%) of 205 patients with venous thromboembolic disease and in 1 (0.25%) of 394 controls, suggesting that it may be a risk factor. However, in vitro functional expression assays indicated that the -33G-A change caused only a mild decrease in promoter activity, suggesting that it may not be a risk factor for venous thrombosis by lowering the expression of THBD.

Among 320 Chinese patients with coronary artery disease and 200 matched controls, Li et al. (2000) found a significant association between the -33G-A variant and disease. The GA and AA genotypes were found in 23.8% of patients compared to 15.5% of controls (OR of 1.70, p = 0.031). The soluble thrombomodulin level was significantly higher in patients compared to controls, was higher in patients with the GG genotype compared to those with the GA or AA genotype, and increased with more severe disease in those with the GG genotype, but not in those with the GA or AA genotype.

Faioni et al. (2002) examined 38 patients with recurrent, documented thrombotic events at a young age and a positive family history. One patient with thrombophilia was found to have a heterozygous -33G-A transition (also known as -201G-A in another numbering system) in the promoter region of the THBD gene. This patient had a deep venous thrombosis of a lower limb at age 39 years, followed by 3 recurrent events at age 40, including a pulmonary embolism.


.0005 HEMOLYTIC UREMIC SYNDROME, ATYPICAL, SUSCEPTIBILITY TO, 6

THBD, ALA43THR
  
RCV000013555...

In a 24-year-old man with recurrent AHUS6 (612926) since age 1 year, Delvaeye et al. (2009) identified a heterozygous mutation in the THBD gene, resulting in an ala43-to-thr (A43T) substitution in the lectin-like domain of the protein. He had had several episodes of aHUS in infancy, leading to chronic renal failure. Serum C3 (120700) was decreased, consistent with activation of the alternative complement pathway. He had 8 sibs, 3 of whom had died during acute episodes of aHUS. A sister, who also carried the A43T mutation, had had 1 aHUS episode during infancy. The unaffected mother and another unaffected sib were also heterozygous carriers. In vitro functional expression studies showed that cells transfected with mutant THBD were less effective in converting C3b to iC3b on the cell surface after complement activation, and were thus not as well protected against complement activation.


.0006 HEMOLYTIC UREMIC SYNDROME, ATYPICAL, SUSCEPTIBILITY TO, 6

THBD, ASP53GLY
  
RCV000013556

In a boy with AHUS6 (612926), Delvaeye et al. (2009) identified a heterozygous mutation in the THBD gene, resulting in an asp53-to-gly (D53G) substitution in the lectin-like domain of the protein. He had recurrent episodes since age 6 months and 1 sib who had died of aHUS. The unaffected mother and an unaffected brother also carried the mutation. In vitro functional expression studies showed that cells transfected with mutant THBD were less effective in converting C3b to iC3b on the cell surface after complement activation, and were thus not as well protected against complement activation.


.0007 HEMOLYTIC UREMIC SYNDROME, ATYPICAL, SUSCEPTIBILITY TO, 6

THBD, PRO495SER
  
RCV000013557...

In a girl with recurrent AHUS6 (612926) since childhood and residual renal dysfunction, Delvaeye et al. (2009) identified a heterozygous mutation in the THBD gene, resulting in a pro495-to-ser (P495S) substitution in the serine-threonine-rich region of the protein. Serum C3 (120700) was decreased. In vitro functional expression studies showed that cells transfected with mutant THBD were less effective in converting C3b to iC3b on the cell surface after complement activation, and were thus not as well protected against complement activation.


.0008 VARIANT OF UNKNOWN SIGNIFICANCE

THBD, ALA455VAL
  
RCV000302594...

This common polymorphism in the THBD gene, a 1418C-T transition resulting in an ala455-to-val (A455V) substitution in the sixth EGF-like domain in the thrombin-binding domain (Cole et al., 2004), is classified as a variant of unknown significance because there are conflicting reports about its role in thrombophilia and myocardial infarction.

Norlund et al. (1997) found an association between the A455V substitution in the THBD gene and the development of premature myocardial infarction (MI). Among 97 MI survivors and 159 controls, the C allele (ala455) was significantly more frequent among patients than controls (0.82 compared to 0.72; p = 0.035). Norlund et al. (1997) suggested that the A455V substitution may affect the function of thrombomodulin and activation of the protein C anticoagulant pathway.

Among 104 patients with MI who had no history of thrombotic episodes and 104 controls, Ireland et al. (1997) found no association between disease and the A455V variant.

In a cohort of 376 patients (23% black, 77% white) with coronary heart disease, including MI, and 461 controls, Wu et al. (2001) found that the ala455/ala455 (AA) genotype was significantly more prevalent in controls compared to patients (p = 0.016). The prevalence of the AA genotype in black and white controls was 93% and 67%, respectively (p = 0.018). Statistical analysis indicated that having the val455 allele increased the risk of coronary heart disease by 6.1-fold in blacks, but not in whites. There was no association between this SNP and soluble THBD. Wu et al. (2001) noted that their results conflicted with those of Norlund et al. (1997).

Faioni et al. (2002) found no association with venous thrombosis and the A455V polymorphism among 38 patients and controls.

In a cohort of 141 young women (44% black and 56% white; 15 to 44 years of age) with ischemic stroke and 210 controls (35% black), Cole et al. (2004) found a significant association between stroke and the AA genotype compared to the AV or VV genotype (OR of 1.9). The AA genotype was more common among black than white controls (81% vs 68%), but there was no significant interaction between the risk genotype and race (OR of 2.7 for blacks and 1.6 for whites). The association was stronger when probable and possible causes of stroke were removed from the analysis. Cole et al. (2004) concluded that the AA genotype is more prevalent among blacks than whites and is associated with increased risk of early-onset ischemic stroke. However, it was unclear whether this polymorphism was functionally related to thrombomodulin expression or whether the association was due to linkage to a nearby functional variant.


.0009 THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, ARG385SER
  
RCV000022787

In a woman with recurrent deep venous thrombosis beginning at age 76 who had a myocardial infarction at age 90, Kunz et al. (2002) identified a heterozygous 1209G-T transversion in the THBD gene, resulting in an arg385-to-ser (R385S) substitution in the last amino acid in the fourth EGF-like domain, which is important for efficient protein C activation. In vitro functional expression studies showed that the mutant protein had reduced expression (50% compared to wildtype), as well as significantly decreased cofactor activity with increased Km values for protein C activation.


.0010 THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, -151G-T (rs16984852)
  
RCV000128419...

Tang et al. (2013) demonstrated that the -151G-T variant in the 5-prime UTR of the THBD gene significantly reduced gene expression and caused a predisposition to venous thrombosis (THPH12; 614486). In a case-control study, heterozygotes had a 2.80-fold (95% confidence interval = 1.88-4.29) increased risk of venous thrombosis. In a family analysis involving 176 first-degree relatives from 38 index families, Tang et al. (2013) showed that first-degree relatives with this variant had a 3.42-fold increased risk of venous thrombosis; their probability of remaining thrombosis-free was significantly lower than that of relatives without the variant.


REFERENCES

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  28. Ziegler-Heitbrock, L., Ancuta, P., Crowe, S., Dalod, M., Grau, V., Hart, D. N., Leenen, P. J. M., Liu, Y.-J., MacPherson, G., Randolph, G. J., Scherberich, J., Schmitz, J., Shortman, K., Sozzani, S., Strobl, H., Zembala, M., Austyn, J. M., Lutz, M. B. Nomenclature of monocytes and dendritic cells in blood. Blood 116: e74-e80, 2010. Note: Electronic Article. [PubMed: 20628149, related citations] [Full Text]


Ada Hamosh - updated : 6/25/2014
Cassandra L. Kniffin - updated : 2/23/2012
Paul J. Converse - updated : 7/15/2011
Cassandra L. Kniffin - updated : 7/27/2009
Ada Hamosh - updated : 2/27/2003
Victor A. McKusick - updated : 10/16/2002
Victor A. McKusick - updated : 12/5/2001
Victor A. McKusick - updated : 11/9/2001
Victor A. McKusick - updated : 2/3/1999
Victor A. McKusick - updated : 2/18/1997
Creation Date:
Victor A. McKusick : 9/2/1987
alopez : 12/12/2017
carol : 09/01/2016
carol : 09/23/2014
alopez : 6/25/2014
carol : 12/19/2013
carol : 1/7/2013
terry : 3/12/2012
carol : 3/7/2012
mgross : 3/2/2012
carol : 3/1/2012
carol : 2/28/2012
terry : 2/28/2012
carol : 2/28/2012
ckniffin : 2/23/2012
carol : 11/23/2011
terry : 11/4/2011
mgross : 7/15/2011
mgross : 7/15/2011
carol : 7/15/2011
carol : 4/11/2011
ckniffin : 4/8/2011
carol : 4/7/2011
carol : 7/30/2009
ckniffin : 7/27/2009
carol : 10/21/2008
carol : 10/9/2008
carol : 10/8/2008
alopez : 12/1/2006
wwang : 11/8/2006
mgross : 3/17/2004
alopez : 3/4/2003
alopez : 3/4/2003
terry : 2/27/2003
tkritzer : 11/19/2002
tkritzer : 11/4/2002
tkritzer : 10/22/2002
tkritzer : 10/22/2002
terry : 10/16/2002
ckniffin : 6/5/2002
alopez : 12/11/2001
terry : 12/5/2001
carol : 11/28/2001
mcapotos : 11/26/2001
terry : 11/9/2001
alopez : 2/3/2000
carol : 2/11/1999
terry : 2/3/1999
jenny : 2/18/1997
terry : 2/12/1997
terry : 6/14/1996
terry : 6/11/1996
carol : 2/20/1995
carol : 9/21/1993
supermim : 3/16/1992
supermim : 3/20/1990
carol : 12/18/1989
carol : 12/12/1989

* 188040

THROMBOMODULIN; THBD


Alternative titles; symbols

THRM
CD141 ANTIGEN; CD141


HGNC Approved Gene Symbol: THBD

SNOMEDCT: 1197595004;  


Cytogenetic location: 20p11.21     Genomic coordinates (GRCh38): 20:23,045,633-23,049,672 (from NCBI)


Gene-Phenotype Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
20p11.21 {Hemolytic uremic syndrome, atypical, susceptibility to, 6} 612926 Autosomal dominant 3
Thrombophilia 12 due to thrombomodulin defect 614486 Autosomal dominant 3

TEXT

Description

The THBD gene encodes thrombomodulin, an endothelial cell surface glycoprotein that forms a 1:1 complex with the coagulation factor thrombin (F2; 176930). Binding of thrombin to this high-affinity receptor alters its specificity toward several substrates, ultimately acting as an antithrombotic factor. The F2:THBD complex activates protein C (PROC; 612283) approximately 1,000 times faster than thrombin alone, and activated protein C degrades clotting factors V (F5; 612309) and VIII (F8; 300841). In addition, THBD can inhibit procoagulant functions of thrombin, such as platelet activation or fibrinogen clotting. THBD can also promote antithrombin III (SERPINC1; 107300) inhibition of thrombin. Thus, thrombomodulin converts thrombin into a physiologic anticoagulant (summary by Esmon (1987) and Anastasiou et al., 2012).


Cloning and Expression

Wen et al. (1987) presented the complete cDNA sequence of human thrombomodulin. The sequence encodes a 60.3-kD protein of 575 amino acids. The predicted protein sequence includes a signal peptide of about 21 amino acids, an amino terminal ligand-binding domain of about 223 amino acids, an epidermal growth factor (EGF) homology region (see 131530) of 236 amino acids, a serine/threonine-rich segment of 34 amino acids, a membrane-spanning domain of 23 amino acids, and a cytoplasmic tail of 38 amino acids. The EGF homology region consists of 6 tandemly repeated EGF-like domains. The organization of thrombomodulin is similar to that of LDL receptor (606945), and the protein is homologous to a large number of other proteins that also contain EGF-like domains, including factor VII (613878), factor IX (300746), factor X (613872), factor XII (610619), protein C, tissue plasminogen activator (173370), and urokinase (191840).


Gene Structure

Jackman et al. (1987) reviewed the structure of the thrombomodulin gene and commented on the lack of introns.


Mapping

By molecular hybridization to sorted chromosomes, Wen et al. (1987) localized the structural gene for thrombomodulin to chromosome 20. By in situ hybridization, Espinosa et al. (1989) localized the THBD gene to 20p12-cen. By FISH, Yasuda et al. (1993) assigned the THBD gene to 20p11, proximal to NEC2 (162151) and SSTR5 (182455) which are located at 20p11.2. By radiation hybrid mapping, Maglott et al. (1996) localized the THBD gene to a region corresponding to 20p11.2.


Gene Function

Ishii and Majerus (1985) demonstrated thrombomodulin in human plasma and urine. The physiologic significance of circulating and urinary thrombomodulin was obscure.

Malignant primary tumors of the pericardium such as primary pericardial mesothelioma are very rare. Thrombomodulin has been identified on the pleural mesothelioma cells. Okura et al. (1996) described the case of a 25-year-old man who was found to have a pericardial mesothelioma secreting thrombomodulin. Very little clot formation in the pericardial space may have been the result of the anticoagulant effect of thrombomodulin.

Using microarray technology to identify CLOCK (601851)-controlled genes in human and murine vascular endothelial cells, Takeda et al. (2007) found that thrombomodulin was upregulated by CLOCK in these cells. Thbd mRNA and protein showed a clear circadian oscillation in murine heart and lung. A heterodimer of CLOCK and BMAL2 (ARNTL2; 614517) bound directly to the E-box of the THBD promoter, resulting in activation. The phase of circadian oscillation of Thbd mRNA expression was altered by temporal feeding restriction in mice, suggesting that gene expression is regulated by the peripheral clock system. In addition, this circadian oscillation of Thbd was not seen in Clock mutant mice. The data suggested that there is a peripheral clock in vascular endothelial cells that regulates THBD gene expression, and that the oscillation of this expression may contribute to the circadian variation of cardiovascular events.

In in vitro cellular studies, Delvaeye et al. (2009) demonstrated that thrombomodulin binds to C3b (see 120700) and factor H (CFH; 134370) and negatively regulates complement by accelerating factor I (CFI; 217030)-mediated inactivation of C3b in the presence of cofactors. By promoting activation of the plasma procarboxypeptidase B (CPB2; 603101), thrombomodulin also accelerates the inactivation of anaphylatoxins C3a and C5a. Thus, thrombomodulin provides protection against complement activation.

As part of an effort to clarify the nomenclature for monocytes and dendritic cells (DCs) in blood, Ziegler-Heitbrock et al. (2010) reported that CD141 is a marker for 1 of 2 types of myeloid DCs. CD141-positive myeloid DCs represent an immature or precursor stage of circulating DCs.


Molecular Genetics

Thrombophilia Due to Thrombomodulin Defect

The role of thrombomodulin in thrombosis (THPH12; 614486) is controversial. Although there have been several reports of THBD mutations in patients with venous thrombosis, clear functional evidence for the pathogenicity of these mutations is lacking. In a review, Anastasiou et al. (2012) noted that thrombomodulin has a major role in capillary beds and that THBD variation may not be associated with large vessel thrombosis. It is likely that genetic or environmental risk factors in addition to THBD variation are involved in the pathogenesis of venous thrombosis. However, variation in the THBD gene may be associated with increased risk for arterial thrombosis and myocardial infarction. This association may be attributed to the fact that thrombomodulin modulates inflammatory processes, complement activity, and fibrinolysis.

Late fetal loss can be associated with placental insufficiency and coagulation defects. Thrombomodulin and the endothelial protein C receptor (EPCR; 600646) are glycoprotein receptors expressed mainly on the endothelial surface of blood vessels and also in the placenta; they both play a key physiologic role in the protein C anticoagulant pathway. Franchi et al. (2001) investigated the possibility that defects in these proteins play an important role in the pathogenesis of late fetal loss. They performed a case-control study in 95 women with unexplained late fetal loss (after 20 weeks); the control group comprised 236 women who had given birth to at least 1 healthy baby and had no history of late fetal loss or obstetrical complications. In the 95 patients, they found 5 mutations in the THBD gene and 2 in the EPCR gene; in the 236 control subjects, they found 3 mutations in the THBD gene and 1 in the EPCR gene. The relative risk for late fetal loss for carriers of mutation in either the THBD or EPCR gene was estimated by an odds ratio of 4.0.

To evaluate the contribution of THBD gene mutations to venous thrombosis, Faioni et al. (2002) examined 38 patients with recurrent, documented thrombotic events at a young age and a positive family history. Twelve individuals with low levels of soluble thrombomodulin in plasma were also studied. Two mutations were identified: -33G-A (188040.0004), in a severely thrombophilic patient, and D468Y (188040.0001). The allelic frequency of an ala455-to-val polymorphism (A455V; 188040.0008) was identical in patients and controls. Faioni et al. (2002) concluded that mutations in the THBD gene are a very rare cause of severe thrombophilia.

Tang et al. (2013) studied venous thrombosis in the Chinese population, examining 1,304 individuals diagnosed with a first venous thrombosis and 1,334 age- and sex-matched healthy participants. Resequencing of THBD in 60 individuals with venous thrombosis and in 60 controls, and a functional assay, showed that a common variant, c.-151G-T (188040.0010), in the 5-prime UTR significantly reduced the gene expression and could cause a predisposition to venous thrombosis. This variant was then genotyped in a case-control study, and results indicated that heterozygotes had a 2.80-fold (95% confidence interval = 1.88-4.29) increased risk of venous thrombosis. The THBD c.-151G-T variant was further investigated in a family analysis involving 176 first-degree relatives from 38 index families. First-degree relatives with this variant had a 3.42-fold increased risk of venous thrombosis, and their probability of remaining thrombosis-free was significantly lower than that of relatives without the variant. In addition, 5 rare mutations that might be deleterious were also identified in thrombophilic individuals by sequencing.

Susceptibility to Atypical Hemolytic Uremic Syndrome 6

In 7 (4.6%) of 153 patients with atypical hemolytic uremic syndrome (AHUS6; 612926), Delvaeye et al. (2009) identified 6 different heterozygous mutations in the THBD gene (see, e.g., 188040.0005-188040.0007). In vitro functional expression studies showed that cells transfected with mutant THBD were less effective in converting C3b to iC3b on the cell surface after complement activation, and were thus not as well protected against complement activation.


Animal Model

Isermann et al. (2003) found that disruption of the mouse thrombomodulin gene leads to embryonic lethality caused by a defect in the placenta. They showed that the abortion of thrombomodulin-deficient embryos is caused by tissue factor (134390)-initiated activation of the blood coagulation cascade at the fetomaternal interface. Activated coagulation factors induced cell death and growth inhibition of placental trophoblast cells by 2 distinct mechanisms. The death of giant trophoblast cells was caused by the conversion of fibrinogen to fibrin (see 134820) and subsequent formation of fibrin degradation products. In contrast, the growth arrest of trophoblast cells is not mediated by fibrin, but is a likely result of engagement of the protease-activated receptors PAR2 (600933) and PAR4 (602779) by coagulation factors. Isermann et al. (2003) concluded that their findings show a novel function for the thrombomodulin-protein C system in controlling the growth and survival of trophoblast cells in the placenta. This function is essential for the maintenance of pregnancy.


ALLELIC VARIANTS 10 Selected Examples):

.0001   RECLASSIFIED - VARIANT OF UNKNOWN SIGNIFICANCE

THBD, ASP468TYR
SNP: rs41348347, gnomAD: rs41348347, ClinVar: RCV000013551, RCV000263795, RCV000949435, RCV001818153, RCV002293979, RCV003924830

This variant, formerly titled THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT (614486), has been reclassified based on the findings of Nakazawa et al. (1999) and Kunz et al. (2002).

In a 45-year-old Hispanic man who developed a pulmonary embolism, Ohlin and Marlar (1995) identified a heterozygous 1456G-T transversion in the THBD gene, resulting in an asp468-to-tyr (D468Y) substitution between the transmembrane domain and the sixth EGF-like domain. He had decreased soluble THBD fragments in serum compared to controls. The patient's mother died suddenly, apparently of pulmonary embolus; his 23-year-old son, who had no history of thrombosis, was heterozygous for the mutation.

Nakazawa et al. (1999) demonstrated that the D468Y variant protein was expressed normally at the cell surface in COS-7 cells and had normal cofactor activity for activation of protein C. In addition, the Km and Vmax of the variant protein were similar to wildtype, casting doubt on its pathogenicity.

Faioni et al. (2002) identified a heterozygous D468Y substitution in 1 of 12 patients with thrombophilia and low serum THBD levels. The patient was a 52-year-old woman with deep vein thrombosis of the lower limb and a stroke. However, Faioni et al. (2002) noted that there is no evidence to support the frequent involvement of THBD mutations in large vessel thrombosis, if at all, and suggested that THBD defects be sought only for research purposes.

Kunz et al. (2002) found no abnormality in cell surface expression or thrombomodulin cofactor function in studies of the D468Y protein.


.0002   THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, ALA25THR
SNP: rs2122673257, ClinVar: RCV000013552

In 2 unrelated patients with thrombophilia due to thrombomodulin defect (614486), Doggen et al. (1998) identified a heterozygous 127G-A mutation in the THBD gene, resulting in an ala25-to-thr (A25T) substitution. The patients were ascertained from a larger cohort of 104 patients with myocardial infarction. In a larger study of 560 men with a first myocardial infarction before the age of 70, Doggen et al. (1998) found that 12 were carriers of the A25T substitution. In a control group of 646 men, frequency-matched for age, 7 were carriers of the A25T substitution. The allelic frequencies were 1.07% among patients and 0.54% among controls, suggesting an odds ratio of 2.0. In patients below age 50, the predicted risk was almost 7 times increased (odds ratio, 6.5). In the presence of smoking or a metabolic risk factor, the predicted risk increased to 9-fold and 4-fold, respectively.

In a 42-year-old Swedish woman with thrombophilia due to thrombomodulin defect who developed a sagittal sinus thrombosis causing neurologic symptoms, Norlund et al. (1997) identified a heterozygous A25T mutation. She had been taking oral contraceptives for 18 years. Her unaffected 16-year-old daughter also carried the mutation. The substitution is located in a conserved residue in the N terminal, lectin-like extracellular domain of the protein, which may be involved in regulation of cell surface expression of the protein.

Kunz et al. (2002) found no abnormality in cell surface expression or thrombomodulin cofactor function in studies of the A25T protein.


.0003   THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, 1-BP INS, 1689T
ClinVar: RCV000013553

In a man with thrombophilia due to thrombomodulin defect (614486) resulting in an occlusive myocardial infarction at age 52 years, Kunz et al. (2000) found a heterozygous frameshift insertion mutation, 1689insT, in the THBD gene. The mutation predicts an elongated gene product because of substitution of the last 12 C-terminal amino acids by 61 abnormal residues. Pedigree analysis suggested that a brother who had suffered a fatal myocardial infarction probably also carried the mutation. Known risk factors for myocardial infarction, including smoking, increased blood pressure, elevated triglycerides, and elevated cholesterol, were present in the proband and other family members. Carriers of the mutant allele expressed significantly lower amounts of thrombomodulin on the surface of their monocytes and lower levels of soluble thrombomodulin in plasma. Transfection of the mutation in COS-7 cells resulted in reduced cell surface expression of mutant THBD associated with impaired translocation through the endoplasmic reticulum/Golgi apparatus compared to wildtype. In addition, cells expressing abnormal thrombomodulin had a 2.5-fold reduced ability to accelerate the thrombin (F2; 176930)-mediated activation of protein C (PROC; 612283).


.0004   THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, -33G-A, PROMOTER
SNP: rs13306848, gnomAD: rs13306848, ClinVar: RCV001724979, RCV001810751

Ireland et al. (1997) identified a heterozygous -33G-A transition in the promoter region of the THBD gene adjacent to the TATA in 1 of 104 patients with myocardial infarction (614486) and in 1 control. Both individuals were of Asian origin.

Le Flem et al. (1999) identified a heterozygous -33G-A transition in the THBD gene in 2 (0.97%) of 205 patients with venous thromboembolic disease and in 1 (0.25%) of 394 controls, suggesting that it may be a risk factor. However, in vitro functional expression assays indicated that the -33G-A change caused only a mild decrease in promoter activity, suggesting that it may not be a risk factor for venous thrombosis by lowering the expression of THBD.

Among 320 Chinese patients with coronary artery disease and 200 matched controls, Li et al. (2000) found a significant association between the -33G-A variant and disease. The GA and AA genotypes were found in 23.8% of patients compared to 15.5% of controls (OR of 1.70, p = 0.031). The soluble thrombomodulin level was significantly higher in patients compared to controls, was higher in patients with the GG genotype compared to those with the GA or AA genotype, and increased with more severe disease in those with the GG genotype, but not in those with the GA or AA genotype.

Faioni et al. (2002) examined 38 patients with recurrent, documented thrombotic events at a young age and a positive family history. One patient with thrombophilia was found to have a heterozygous -33G-A transition (also known as -201G-A in another numbering system) in the promoter region of the THBD gene. This patient had a deep venous thrombosis of a lower limb at age 39 years, followed by 3 recurrent events at age 40, including a pulmonary embolism.


.0005   HEMOLYTIC UREMIC SYNDROME, ATYPICAL, SUSCEPTIBILITY TO, 6

THBD, ALA43THR
SNP: rs1800576, gnomAD: rs1800576, ClinVar: RCV000013555, RCV000886689, RCV001328105, RCV001818154, RCV003914835

In a 24-year-old man with recurrent AHUS6 (612926) since age 1 year, Delvaeye et al. (2009) identified a heterozygous mutation in the THBD gene, resulting in an ala43-to-thr (A43T) substitution in the lectin-like domain of the protein. He had had several episodes of aHUS in infancy, leading to chronic renal failure. Serum C3 (120700) was decreased, consistent with activation of the alternative complement pathway. He had 8 sibs, 3 of whom had died during acute episodes of aHUS. A sister, who also carried the A43T mutation, had had 1 aHUS episode during infancy. The unaffected mother and another unaffected sib were also heterozygous carriers. In vitro functional expression studies showed that cells transfected with mutant THBD were less effective in converting C3b to iC3b on the cell surface after complement activation, and were thus not as well protected against complement activation.


.0006   HEMOLYTIC UREMIC SYNDROME, ATYPICAL, SUSCEPTIBILITY TO, 6

THBD, ASP53GLY
SNP: rs121918667, gnomAD: rs121918667, ClinVar: RCV000013556

In a boy with AHUS6 (612926), Delvaeye et al. (2009) identified a heterozygous mutation in the THBD gene, resulting in an asp53-to-gly (D53G) substitution in the lectin-like domain of the protein. He had recurrent episodes since age 6 months and 1 sib who had died of aHUS. The unaffected mother and an unaffected brother also carried the mutation. In vitro functional expression studies showed that cells transfected with mutant THBD were less effective in converting C3b to iC3b on the cell surface after complement activation, and were thus not as well protected against complement activation.


.0007   HEMOLYTIC UREMIC SYNDROME, ATYPICAL, SUSCEPTIBILITY TO, 6

THBD, PRO495SER
SNP: rs1800578, gnomAD: rs1800578, ClinVar: RCV000013557, RCV000899504, RCV001328104, RCV003313772, RCV003944819

In a girl with recurrent AHUS6 (612926) since childhood and residual renal dysfunction, Delvaeye et al. (2009) identified a heterozygous mutation in the THBD gene, resulting in a pro495-to-ser (P495S) substitution in the serine-threonine-rich region of the protein. Serum C3 (120700) was decreased. In vitro functional expression studies showed that cells transfected with mutant THBD were less effective in converting C3b to iC3b on the cell surface after complement activation, and were thus not as well protected against complement activation.


.0008   VARIANT OF UNKNOWN SIGNIFICANCE

THBD, ALA455VAL
SNP: rs1042579, gnomAD: rs1042579, ClinVar: RCV000302594, RCV001516722, RCV001643035, RCV002294300, RCV003969973

This common polymorphism in the THBD gene, a 1418C-T transition resulting in an ala455-to-val (A455V) substitution in the sixth EGF-like domain in the thrombin-binding domain (Cole et al., 2004), is classified as a variant of unknown significance because there are conflicting reports about its role in thrombophilia and myocardial infarction.

Norlund et al. (1997) found an association between the A455V substitution in the THBD gene and the development of premature myocardial infarction (MI). Among 97 MI survivors and 159 controls, the C allele (ala455) was significantly more frequent among patients than controls (0.82 compared to 0.72; p = 0.035). Norlund et al. (1997) suggested that the A455V substitution may affect the function of thrombomodulin and activation of the protein C anticoagulant pathway.

Among 104 patients with MI who had no history of thrombotic episodes and 104 controls, Ireland et al. (1997) found no association between disease and the A455V variant.

In a cohort of 376 patients (23% black, 77% white) with coronary heart disease, including MI, and 461 controls, Wu et al. (2001) found that the ala455/ala455 (AA) genotype was significantly more prevalent in controls compared to patients (p = 0.016). The prevalence of the AA genotype in black and white controls was 93% and 67%, respectively (p = 0.018). Statistical analysis indicated that having the val455 allele increased the risk of coronary heart disease by 6.1-fold in blacks, but not in whites. There was no association between this SNP and soluble THBD. Wu et al. (2001) noted that their results conflicted with those of Norlund et al. (1997).

Faioni et al. (2002) found no association with venous thrombosis and the A455V polymorphism among 38 patients and controls.

In a cohort of 141 young women (44% black and 56% white; 15 to 44 years of age) with ischemic stroke and 210 controls (35% black), Cole et al. (2004) found a significant association between stroke and the AA genotype compared to the AV or VV genotype (OR of 1.9). The AA genotype was more common among black than white controls (81% vs 68%), but there was no significant interaction between the risk genotype and race (OR of 2.7 for blacks and 1.6 for whites). The association was stronger when probable and possible causes of stroke were removed from the analysis. Cole et al. (2004) concluded that the AA genotype is more prevalent among blacks than whites and is associated with increased risk of early-onset ischemic stroke. However, it was unclear whether this polymorphism was functionally related to thrombomodulin expression or whether the association was due to linkage to a nearby functional variant.


.0009   THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, ARG385SER
SNP: rs398122807, ClinVar: RCV000022787

In a woman with recurrent deep venous thrombosis beginning at age 76 who had a myocardial infarction at age 90, Kunz et al. (2002) identified a heterozygous 1209G-T transversion in the THBD gene, resulting in an arg385-to-ser (R385S) substitution in the last amino acid in the fourth EGF-like domain, which is important for efficient protein C activation. In vitro functional expression studies showed that the mutant protein had reduced expression (50% compared to wildtype), as well as significantly decreased cofactor activity with increased Km values for protein C activation.


.0010   THROMBOPHILIA DUE TO THROMBOMODULIN DEFECT

THBD, -151G-T ({dbSNP rs16984852})
SNP: rs16984852, gnomAD: rs16984852, ClinVar: RCV000128419, RCV001142106, RCV002055839, RCV002247504

Tang et al. (2013) demonstrated that the -151G-T variant in the 5-prime UTR of the THBD gene significantly reduced gene expression and caused a predisposition to venous thrombosis (THPH12; 614486). In a case-control study, heterozygotes had a 2.80-fold (95% confidence interval = 1.88-4.29) increased risk of venous thrombosis. In a family analysis involving 176 first-degree relatives from 38 index families, Tang et al. (2013) showed that first-degree relatives with this variant had a 3.42-fold increased risk of venous thrombosis; their probability of remaining thrombosis-free was significantly lower than that of relatives without the variant.


REFERENCES

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Contributors:
Ada Hamosh - updated : 6/25/2014
Cassandra L. Kniffin - updated : 2/23/2012
Paul J. Converse - updated : 7/15/2011
Cassandra L. Kniffin - updated : 7/27/2009
Ada Hamosh - updated : 2/27/2003
Victor A. McKusick - updated : 10/16/2002
Victor A. McKusick - updated : 12/5/2001
Victor A. McKusick - updated : 11/9/2001
Victor A. McKusick - updated : 2/3/1999
Victor A. McKusick - updated : 2/18/1997

Creation Date:
Victor A. McKusick : 9/2/1987

Edit History:
alopez : 12/12/2017
carol : 09/01/2016
carol : 09/23/2014
alopez : 6/25/2014
carol : 12/19/2013
carol : 1/7/2013
terry : 3/12/2012
carol : 3/7/2012
mgross : 3/2/2012
carol : 3/1/2012
carol : 2/28/2012
terry : 2/28/2012
carol : 2/28/2012
ckniffin : 2/23/2012
carol : 11/23/2011
terry : 11/4/2011
mgross : 7/15/2011
mgross : 7/15/2011
carol : 7/15/2011
carol : 4/11/2011
ckniffin : 4/8/2011
carol : 4/7/2011
carol : 7/30/2009
ckniffin : 7/27/2009
carol : 10/21/2008
carol : 10/9/2008
carol : 10/8/2008
alopez : 12/1/2006
wwang : 11/8/2006
mgross : 3/17/2004
alopez : 3/4/2003
alopez : 3/4/2003
terry : 2/27/2003
tkritzer : 11/19/2002
tkritzer : 11/4/2002
tkritzer : 10/22/2002
tkritzer : 10/22/2002
terry : 10/16/2002
ckniffin : 6/5/2002
alopez : 12/11/2001
terry : 12/5/2001
carol : 11/28/2001
mcapotos : 11/26/2001
terry : 11/9/2001
alopez : 2/3/2000
carol : 2/11/1999
terry : 2/3/1999
jenny : 2/18/1997
terry : 2/12/1997
terry : 6/14/1996
terry : 6/11/1996
carol : 2/20/1995
carol : 9/21/1993
supermim : 3/16/1992
supermim : 3/20/1990
carol : 12/18/1989
carol : 12/12/1989