Entry - #309549 - INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED 9; XLID9 - OMIM
# 309549

INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED 9; XLID9


Alternative titles; symbols

MENTAL RETARDATION, X-LINKED 9; MRX9
MENTAL RETARDATION, X-LINKED 44; MRX44


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
Xp11.23 Intellectual developmental disorder, X-linked 9 309549 XLR 3 FTSJ1 300499
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- X-linked recessive
HEAD & NECK
Ears
- Large ears
Eyes
- Wide palpebral fissures
- Periorbital fullness
Mouth
- Full lower lip
NEUROLOGIC
Central Nervous System
- Mental retardation, moderate to severe
- Psychomotor delay
Behavioral Psychiatric Manifestations
- Aggressive outbursts (in some patients)
MOLECULAR BASIS
- Caused by mutation in the FTSJ RNA 2-prime-O-methyltransferase 1 gene (FTSJ1, 300499.0001)
Intellectual developmental disorder, nonsyndromic, X-linked - PS309530 - 54 Entries
Location Phenotype Inheritance Phenotype
mapping key
Phenotype
MIM number
Gene/Locus Gene/Locus
MIM number
Xp22.3 Intellectual developmental disorder, X-linked 2 XL 2 300428 XLID2 300428
Xp22.2 Intellectual developmental disorder, X-linked 73 XLR 2 300355 XLID73 300355
Xp22.2 Intellectual developmental disorder, X-linked 104 XL 3 300983 FRMPD4 300838
Xp22.12 Intellectual developmental disorder, X-linked 19 XLD 3 300844 RPS6KA3 300075
Xp22.11 Intellectual developmental disorder, X-linked 103 XLR 3 300982 KLHL15 300980
Xp21.3 Intellectual developmental disorder, X-linked 29 XLR 3 300419 ARX 300382
Xp21.3-p21.2 Intellectual developmental disorder, X-linked 21 XLR 3 300143 IL1RAPL1 300206
Xp11-q21 Intellectual developmental disorder, X-linked 20 XL 2 300047 XLID20 300047
Xp11.4 Intellectual developmental disorder, X-linked 58 XLR 3 300210 TSPAN7 300096
Xp11.4 Intellectual developmental disorder, X-linked 99, syndromic, female-restricted XLD 3 300968 USP9X 300072
Xp11.4 Intellectual developmental disorder, X-linked 99 XLR 3 300919 USP9X 300072
Xp11.3-q13.3 Intellectual developmental disorder, X-linked 14 XL 2 300062 XLID14 300062
Xp11.3-p11.21 Intellectual developmental disorder, X-linked 45 XL 2 300498 XLID45 300498
Xp11.3-q22.3 Intellectual developmental disorder, X-linked 84 XLR 2 300505 XLID84 300505
Xp11.3 Intellectual developmental disorder, X-linked 89 XLD 2 300848 XLID89 300848
Xp11.3 Intellectual developmental disorder, X-linked 92 XLR 2 300851 XLID92 300851
Xp11.3 Intellectual developmental disorder, X-linked 108 XLR 3 301024 SLC9A7 300368
Xp11.3-p11.23 Intellectual developmental disorder, X-linked 50 XL 3 300115 SYN1 313440
Xp11.2-q12 Intellectual developmental disorder, X-linked 81 XLR 2 300433 XLID81 300433
Xp11.23 Intellectual developmental disorder, X-linked 9 XLR 3 309549 FTSJ1 300499
Xp11.23 Intellectual developmental disorder, X-linked 96 XLR 3 300802 SYP 313475
Xp11.23 Intellectual developmental disorder, X-linked 105 XLR 3 300984 USP27X 300975
Xp11.22 Xp11.22 microduplication syndrome 4 300705 DUPXp11.22 300705
Xp11.22 Intellectual developmental disorder, X-linked 1 XLD 3 309530 IQSEC2 300522
Xq12-q21.3 Intellectual developmental disorder, X-linked 77 XLR 2 300454 XLID77 300454
Xq13.1 Intellectual developmental disorder, X-linked 100 XLR 3 300923 KIF4A 300521
Xq13.1 Intellectual developmental disorder, X-linked 90 XLR 3 300850 DLG3 300189
Xq13.1 Intellectual developmental disorder, X-linked 112 XLR 3 301111 ZMYM3 300061
Xq13.1 Intellectual developmental disorder, X-linked 106 XLR 3 300997 OGT 300255
Xq13.2 Tonne-Kalscheuer syndrome XL 3 300978 RLIM 300379
Xq13.3 Intellectual developmental disorder, X-linked 91 XLD 4 300577 XLID91 300577
Xq13.3 Intellectual developmental disorder, X-linked 98 XLD 3 300912 NEXMIF 300524
Xq21.1 Intellectual developmental disorder, X-linked 93 XLR 3 300659 BRWD3 300553
Xq21.1 Intellectual developmental disorder, X-linked 97 XL 3 300803 ZNF711 314990
Xq22.1 ?Intellectual developmental disorder, X-linked 113 XLR 3 301116 CSTF2 300907
Xq22.2-q26 Intellectual developmental disorder, X-linked 53 XLR 2 300324 XLID53 300324
Xq22.3 ?Intellectual developmental disorder, X-linked 101 XLR 3 300928 MID2 300204
Xq23-q24 Intellectual developmental disorder, X-linked 23 XL 2 300046 XLID23 300046
Xq23 Intellectual developmental disorder, X-linked 63 XLD 3 300387 ACSL4 300157
Xq23 Intellectual developmental disorder, X-linked 30 XLR 3 300558 PAK3 300142
Xq24-q25 Intellectual developmental disorder, X-linked 82 XLR 2 300518 XLID82 300518
Xq24 Intellectual developmental disorder, X-linked 88 XL 2 300852 XLID88 300852
Xq24 ?Intellectual developmental disorder, X-linked 107 XL 3 301013 STEEP1 301012
Xq25-q26 Intellectual developmental disorder, X-linked 46 XLR 2 300436 XLID46 300436
Xq25 Intellectual developmental disorder, X-linked syndromic, Wu type XLR 3 300699 GRIA3 305915
Xq25 Intellectual developmental disorder, X-linked 12 XLR 3 300957 THOC2 300395
Xq26 Intellectual developmental disorder, X-linked 42 2 300372 XLID42 300372
Xq26.3-q27.1 Intellectual developmental disorder, X-linked 110 XLR 3 301095 FGF13 300070
Xq27.3 Intellectual developmental disorder, X-linked 111 XL 3 301107 SLITRK2 300561
Xq28 Intellectual developmental disorder, X-linked 109 XLR 3 309548 AFF2 300806
Xq28 Methylmalonic aciduria and homocysteinemia, cblX type XLR 3 309541 HCFC1 300019
Xq28 Intellectual developmental disorder, X-linked 41 XLD 3 300849 GDI1 300104
Xq28 Intellectual developmental disorder, X-linked 72 XLR 3 300271 RAB39B 300774
Chr.X Intellectual developmental disorder, X-linked 95 XLD 2 300716 XLID95 300716

TEXT

A number sign (#) is used with this entry because of evidence that X-linked intellectual developmental disorder-9 (XLID9) is caused by mutation in the FTSJ1 gene (300499).


Description

X-linked intellectual developmental disorder-9 (XLID9) is characterized by moderately to severely impaired intellectual development. Some patients have also been reported with delayed motor development, seizures, and/or behavioral problems (Hamel et al., 1999; Froyen et al., 2007).


Clinical Features

Hamel et al. (1999) described a 4-generation family segregating X-linked mental retardation. Affected members had nonprogressive mental retardation noted during childhood, and several demonstrated aggressive behavior. The mental retardation in tested members of the family was moderate to severe; none of the patients was able to read, write, or solve simple arithmetic problems.

Froyen et al. (2007) reported 3 Caucasian brothers with nonsyndromic X-linked mental retardation. Two had moderate and 1 had severe intellectual handicap. The oldest patient had autistic behavior that lessened after age 5 years, as well as delayed speech and motor development. The 2 younger brothers also had seizures; 1 had flat nasal bridge and shortened distal phalanges. High-resolution array CGH identified a 50-kb microdeletion at Xp11.23 involving the FTSJ1 and SLC38A5 (300649) genes. Detailed mapping studies suggested that the deletion breakpoints involved the repeat region of the SSX1 gene (312820). The unaffected mother also carried the deletion, but showed complete inactivation of the aberrant X chromosome. Froyen et al. (2007) concluded that the cognitive impairment in this family was most likely due to absence of the FTSJ1 gene.


Mapping

Willems et al. (1993) described linkage studies in a family classified as MRX9 in the nomenclature proposed by Mulley et al. (1992) and reviewed by Neri et al. (1992). The studies suggested localization in the pericentromeric region, namely, Xp21-q13. Winnepenninckx et al. (2002) restudied the Belgian family reported by Willems et al. (1993) and refined the mapping of the MRX9 gene to Xp11.4-p11.22.

Hamel et al. (1999) performed linkage analysis in family MRX44 and obtained a maximum lod score of 2.90 (theta = 0.0) with marker DXS1204. Haplotype construction defined the region to Xp11.3-p11.21, spanning an approximately 10-cM interval flanked by markers DXS1003 and ALAS2.


Molecular Genetics

The MRX44 family of Hamel et al. (1999) was shown by Freude et al. (2004) to carry a mutation in the FTSJ1 gene (300499.0001), resulting in deletion of exon 9.

In the Belgian MRX9 family reported by Willems et al. (1993), Ramser et al. (2004) established a gene catalog for the candidate region defined by Winnepenninckx et al. (2002). Comprehensive mutation analysis by direct sequencing identified an alteration in the conserved acceptor splice site of intron 3 of the FTSJ1 gene (300499.0004).


REFERENCES

  1. Freude, K., Hoffmann, K., Jensen, L.-R., Delatycki, M. B., des Portes, V., Moser, B., Hamel, B., van Bokhoven, H., Moraine, C., Fryns, J.-P., Chelly, J., Gecz, J., Lenzner, S., Kalscheuer, V. M., Ropers, H.-H. Mutations in the FTSJ1 gene coding for a novel S-adenosylmethionine-binding protein cause nonsyndromic X-linked mental retardation. Am. J. Hum. Genet. 75: 305-309, 2004. [PubMed: 15162322, images, related citations] [Full Text]

  2. Froyen, G., Bauters, M., Boyle, J., van Esch, H., Govaerts, K., van Bokhoven, H., Ropers, H.-H., Moraine, C., Chelly, J., Fryns, J.-P., Marynen, P., Gecz, J., Turner, G. Loss of SLC38A5 and FTSJ1 at Xp11.23 in three brothers with non-syndromic mental retardation due to a microdeletion in an unstable genomic region. Hum. Genet. 121: 539-547, 2007. [PubMed: 17333282, related citations] [Full Text]

  3. Hamel, B. C. J., Smits, A. P. T., van den Helm, B., Smeets, D. F. C. M., Knoers, N. V. A. M., van Roosmalen, T., Thoonen, G. H. J., Assman-Hulsmans, C. F. C. H., Ropers, H.-H., Mariman, E. C. M., Kremer, H. Four families (MRX43, MRX44, MRX45, MRX52) with nonspecific X-linked mental retardation: clinical and psychometric data and results of linkage analysis. Am. J. Med. Genet. 85: 290-304, 1999. [PubMed: 10398246, related citations]

  4. Mulley, J. C., Kerr, B., Stevenson, R., Lubs, H. Nomenclature guidelines for X-linked mental retardation. Am. J. Med. Genet. 43: 383-391, 1992. [PubMed: 1605216, related citations] [Full Text]

  5. Neri, G., Chiurazzi, P., Arena, F., Lubs, H. A., Glass, I. A. XLMR genes: update 1992. Am. J. Med. Genet. 43: 373-382, 1992. [PubMed: 1605215, related citations] [Full Text]

  6. Ramser, J., Winnepenninckx, B., Lenski, C., Errijgers, V., Platzer, M., Schwartz, C. E., Meindl, A., Kooy, R. F. A splice site mutation in the methyltransferase gene FTSJ1 in Xp11.23 is associated with non-syndromic mental retardation in a large Belgian family (MRX9). J. Med. Genet. 41: 679-683, 2004. [PubMed: 15342698, related citations] [Full Text]

  7. Willems, P., Vits, L., Buntinx, I., Raeymaekers, P., Van Broeckhoven, C., Ceulemans, B. Localization of a gene responsible for nonspecific mental retardation (MRX9) to the pericentromeric region of the X chromosome. Genomics 18: 290-294, 1993. [PubMed: 8288232, related citations] [Full Text]

  8. Winnepenninckx, B., Errijgers, V., Reyniers, E., De Deyn, P. P., Abidi, F. E., Schwartz, C. E., Kooy, R. F. Family MRX9 revisited: further evidence for locus heterogeneity in MRX. Am. J. Med. Genet. 112: 17-22, 2002. [PubMed: 12239714, related citations] [Full Text]


Cassandra L. Kniffin - updated : 6/12/2007
Victor A. McKusick - updated : 10/12/2004
Victor A. McKusick - updated : 10/7/2002
Victor A. McKusick - updated : 3/25/1998
Creation Date:
Victor A. McKusick : 11/30/1993
carol : 06/07/2023
carol : 06/06/2023
alopez : 08/20/2021
terry : 03/16/2012
wwang : 6/14/2007
ckniffin : 6/12/2007
carol : 2/1/2007
tkritzer : 10/14/2004
terry : 10/12/2004
carol : 3/18/2004
terry : 4/28/2003
tkritzer : 10/9/2002
tkritzer : 10/8/2002
terry : 10/7/2002
alopez : 3/25/1998
terry : 3/17/1998
carol : 10/3/1995
carol : 11/30/1993

# 309549

INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED 9; XLID9


Alternative titles; symbols

MENTAL RETARDATION, X-LINKED 9; MRX9
MENTAL RETARDATION, X-LINKED 44; MRX44


ORPHA: 777;   DO: 0112034;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
Xp11.23 Intellectual developmental disorder, X-linked 9 309549 X-linked recessive 3 FTSJ1 300499

TEXT

A number sign (#) is used with this entry because of evidence that X-linked intellectual developmental disorder-9 (XLID9) is caused by mutation in the FTSJ1 gene (300499).


Description

X-linked intellectual developmental disorder-9 (XLID9) is characterized by moderately to severely impaired intellectual development. Some patients have also been reported with delayed motor development, seizures, and/or behavioral problems (Hamel et al., 1999; Froyen et al., 2007).


Clinical Features

Hamel et al. (1999) described a 4-generation family segregating X-linked mental retardation. Affected members had nonprogressive mental retardation noted during childhood, and several demonstrated aggressive behavior. The mental retardation in tested members of the family was moderate to severe; none of the patients was able to read, write, or solve simple arithmetic problems.

Froyen et al. (2007) reported 3 Caucasian brothers with nonsyndromic X-linked mental retardation. Two had moderate and 1 had severe intellectual handicap. The oldest patient had autistic behavior that lessened after age 5 years, as well as delayed speech and motor development. The 2 younger brothers also had seizures; 1 had flat nasal bridge and shortened distal phalanges. High-resolution array CGH identified a 50-kb microdeletion at Xp11.23 involving the FTSJ1 and SLC38A5 (300649) genes. Detailed mapping studies suggested that the deletion breakpoints involved the repeat region of the SSX1 gene (312820). The unaffected mother also carried the deletion, but showed complete inactivation of the aberrant X chromosome. Froyen et al. (2007) concluded that the cognitive impairment in this family was most likely due to absence of the FTSJ1 gene.


Mapping

Willems et al. (1993) described linkage studies in a family classified as MRX9 in the nomenclature proposed by Mulley et al. (1992) and reviewed by Neri et al. (1992). The studies suggested localization in the pericentromeric region, namely, Xp21-q13. Winnepenninckx et al. (2002) restudied the Belgian family reported by Willems et al. (1993) and refined the mapping of the MRX9 gene to Xp11.4-p11.22.

Hamel et al. (1999) performed linkage analysis in family MRX44 and obtained a maximum lod score of 2.90 (theta = 0.0) with marker DXS1204. Haplotype construction defined the region to Xp11.3-p11.21, spanning an approximately 10-cM interval flanked by markers DXS1003 and ALAS2.


Molecular Genetics

The MRX44 family of Hamel et al. (1999) was shown by Freude et al. (2004) to carry a mutation in the FTSJ1 gene (300499.0001), resulting in deletion of exon 9.

In the Belgian MRX9 family reported by Willems et al. (1993), Ramser et al. (2004) established a gene catalog for the candidate region defined by Winnepenninckx et al. (2002). Comprehensive mutation analysis by direct sequencing identified an alteration in the conserved acceptor splice site of intron 3 of the FTSJ1 gene (300499.0004).


REFERENCES

  1. Freude, K., Hoffmann, K., Jensen, L.-R., Delatycki, M. B., des Portes, V., Moser, B., Hamel, B., van Bokhoven, H., Moraine, C., Fryns, J.-P., Chelly, J., Gecz, J., Lenzner, S., Kalscheuer, V. M., Ropers, H.-H. Mutations in the FTSJ1 gene coding for a novel S-adenosylmethionine-binding protein cause nonsyndromic X-linked mental retardation. Am. J. Hum. Genet. 75: 305-309, 2004. [PubMed: 15162322] [Full Text: https://doi.org/10.1086/422507]

  2. Froyen, G., Bauters, M., Boyle, J., van Esch, H., Govaerts, K., van Bokhoven, H., Ropers, H.-H., Moraine, C., Chelly, J., Fryns, J.-P., Marynen, P., Gecz, J., Turner, G. Loss of SLC38A5 and FTSJ1 at Xp11.23 in three brothers with non-syndromic mental retardation due to a microdeletion in an unstable genomic region. Hum. Genet. 121: 539-547, 2007. [PubMed: 17333282] [Full Text: https://doi.org/10.1007/s00439-007-0343-1]

  3. Hamel, B. C. J., Smits, A. P. T., van den Helm, B., Smeets, D. F. C. M., Knoers, N. V. A. M., van Roosmalen, T., Thoonen, G. H. J., Assman-Hulsmans, C. F. C. H., Ropers, H.-H., Mariman, E. C. M., Kremer, H. Four families (MRX43, MRX44, MRX45, MRX52) with nonspecific X-linked mental retardation: clinical and psychometric data and results of linkage analysis. Am. J. Med. Genet. 85: 290-304, 1999. [PubMed: 10398246]

  4. Mulley, J. C., Kerr, B., Stevenson, R., Lubs, H. Nomenclature guidelines for X-linked mental retardation. Am. J. Med. Genet. 43: 383-391, 1992. [PubMed: 1605216] [Full Text: https://doi.org/10.1002/ajmg.1320430159]

  5. Neri, G., Chiurazzi, P., Arena, F., Lubs, H. A., Glass, I. A. XLMR genes: update 1992. Am. J. Med. Genet. 43: 373-382, 1992. [PubMed: 1605215] [Full Text: https://doi.org/10.1002/ajmg.1320430158]

  6. Ramser, J., Winnepenninckx, B., Lenski, C., Errijgers, V., Platzer, M., Schwartz, C. E., Meindl, A., Kooy, R. F. A splice site mutation in the methyltransferase gene FTSJ1 in Xp11.23 is associated with non-syndromic mental retardation in a large Belgian family (MRX9). J. Med. Genet. 41: 679-683, 2004. [PubMed: 15342698] [Full Text: https://doi.org/10.1136/jmg.2004.019000]

  7. Willems, P., Vits, L., Buntinx, I., Raeymaekers, P., Van Broeckhoven, C., Ceulemans, B. Localization of a gene responsible for nonspecific mental retardation (MRX9) to the pericentromeric region of the X chromosome. Genomics 18: 290-294, 1993. [PubMed: 8288232] [Full Text: https://doi.org/10.1006/geno.1993.1468]

  8. Winnepenninckx, B., Errijgers, V., Reyniers, E., De Deyn, P. P., Abidi, F. E., Schwartz, C. E., Kooy, R. F. Family MRX9 revisited: further evidence for locus heterogeneity in MRX. Am. J. Med. Genet. 112: 17-22, 2002. [PubMed: 12239714] [Full Text: https://doi.org/10.1002/ajmg.10663]


Contributors:
Cassandra L. Kniffin - updated : 6/12/2007
Victor A. McKusick - updated : 10/12/2004
Victor A. McKusick - updated : 10/7/2002
Victor A. McKusick - updated : 3/25/1998

Creation Date:
Victor A. McKusick : 11/30/1993

Edit History:
carol : 06/07/2023
carol : 06/06/2023
alopez : 08/20/2021
terry : 03/16/2012
wwang : 6/14/2007
ckniffin : 6/12/2007
carol : 2/1/2007
tkritzer : 10/14/2004
terry : 10/12/2004
carol : 3/18/2004
terry : 4/28/2003
tkritzer : 10/9/2002
tkritzer : 10/8/2002
terry : 10/7/2002
alopez : 3/25/1998
terry : 3/17/1998
carol : 10/3/1995
carol : 11/30/1993