Entry - *600024 - LAMIN B RECEPTOR; LBR - OMIM
* 600024

LAMIN B RECEPTOR; LBR


Alternative titles; symbols

LMN2R


HGNC Approved Gene Symbol: LBR

Cytogenetic location: 1q42.12     Genomic coordinates (GRCh38): 1:225,401,502-225,428,821 (from NCBI)


Gene-Phenotype Relationships
Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
1q42.12 ?Reynolds syndrome 613471 AD 3
Greenberg skeletal dysplasia 215140 AR 3
Pelger-Huet anomaly 169400 AD 3
Rhizomelic skeletal dysplasia with or without Pelger-Huet anomaly 618019 AR 3


TEXT

Description

The LBR gene encodes the lamin B receptor, an inner nuclear membrane protein that binds lamin B (LMNB1; 150340 and LMNB2; 150341). The nuclear envelope is composed of the nuclear lamina, the nuclear pore complexes, and the nuclear membranes. The nuclear membranes can be divided into 3 morphologically distinct but interconnected domains: the outer nuclear membrane, the inner nuclear membrane, and the nuclear pore membrane. The inner nuclear membrane is adjacent to the nuclear lamina, a meshwork of intermediate filament proteins termed lamins. The nuclear lamina is a discontinuous structure that occupies only a fraction of the nuclear periphery, and at some points, the inner nuclear membrane may interact directly with the chromatin. Several integral proteins of the nuclear envelope inner membrane that may be associated with the lamina and the chromatin have been identified (summary by Ye and Worman, 1994).


Cloning and Expression

Ye and Worman (1994) isolated clones corresponding to the LBR gene from a HeLa cell cDNA library. The deduced 615-residue protein showed 68% amino acid identity with the chicken lamin B receptor. The LBR protein has a basic nucleoplasmic N-terminal domain of 208 amino acids followed by a hydrophobic domain with 8 putative transmembrane segments. Phosphorylation sites were also identified. The LBR N-terminal domain precipitated lamin B from nuclear extracts and associated with DNA. The stretch between amino acids 71 and 100, which contains a ser/arg-rich stretch, was necessary for DNA binding. The findings suggested that LBR can potentially mediate the interaction of both the nuclear lamina and the chromatin with the inner nuclear membrane.

Worman et al. (1988) cloned avian lamin B receptor (LBR) that binds in vitro to lamin B. Subsequently, Courvalin et al. (1990) identified a mammalian homolog of avian LBR was identified by cross-reactive autoantibodies from patients with primary biliary cirrhosis.

In fibroblasts and HeLa cells, Clayton et al. (2010) found localization of LBR outside of the nuclear membrane, where it colocalized with markers of the endoplasmic reticulum. LBR was also expressed in lymphoblastoid cells, differentiated osteoclasts, and osteosarcoma cells. Developing mouse embryos showed strong Lbr expression in the liver, lung, midgut, skin, brain, and developing cartilage. Lbr was also detected in growth plate cartilage, osteoblasts, and connective tissue fibroblasts.


Gene Structure

Schuler et al. (1994) showed by restriction mapping that the human LBR transcription unit spans approximately 35 kb. A transcription start site is located approximately 4 kb 5-prime to the translation initiation codon. The LBR gene contains 13 protein-coding exons. The nucleoplasmic domain is encoded by exons 1 to 4, and the hydrophobic domain, with 8 putative transmembrane segments, is encoded by exons 5 to 13. The hydrophobic domain is homologous to 3 yeast polypeptides, suggesting that this higher eukaryotic gene may have evolved through recombination between a gene that encoded a soluble nuclear protein and a membrane protein gene similar to those in yeast.


Mapping

Wydner et al. (1996) mapped the LBR gene to chromosome 1q42.1 by fluorescence in situ hybridization.


Gene Function

Differentiation of olfactory sensory neurons is characterized by expression of a single olfactory receptor. Clowney et al. (2012) found that silenced olfactory receptor genes from different chromosomes converged into approximately 5 distinct foci within nuclei of mouse olfactory sensory neurons. The active olfactory receptor gene was absent from these foci. Clowney et al. (2012) found that loss of Lbr expression was critical for chromatin compaction and silencing of olfactory receptor genes. Expression of Lbr in mouse olfactory sensory neurons caused redistribution of olfactory receptor gene foci to the nuclear envelope, concomitant with loss of specific olfactory receptor gene expression by individual neurons. Lbr expression did not alter expression of nonolfactory receptor genes and did not alter the distribution of primary heterochromatin marks. Clowney et al. (2012) concluded that the primary epigenetic signature silencing olfactory receptor genes is reinforced by secondary and tertiary repressive organization and that absence of LBR is required for formation of the necessary higher-order repressive heterochromatin.


Molecular Genetics

Pelger-Huet Anomaly

Pelger-Huet anomaly (169400) is an autosomal dominant disorder characterized by abnormal nuclear shape and chromatin organization in blood granulocytes. Affected individuals show hypolobulated neutrophil nuclei with coarse chromatin. Presumed homozygous individuals have ovoid neutrophil nuclei, as well as varying degrees of developmental delay, epilepsy, and skeletal abnormalities. Homozygous offspring in an extinct rabbit lineage showed severe chondrodystrophy, developmental anomalies, and increased pre- and postnatal mortality in association with Pelger-Huet anomaly (Nachtsheim, 1950). By genomewide linkage scan, Hoffmann et al. (2002) showed that Pelger-Huet anomaly is linked to 1q41-q43. In the LBR gene, which resides in this region, they identified 4 splice site, 2 frameshift, and 2 nonsense mutations. The lamin B receptor, a member of the sterol reductase family, is evolutionarily conserved and integral to the inner nuclear membrane; it targets heterochromatin and lamins to the nuclear membrane. Hoffmann et al. (2002) found that lymphoblastoid cells from heterozygous individuals affected with Pelger-Huet anomaly showed reduced expression of the lamin B receptor, and cells homozygous with respect to Pelger-Huet anomaly contain only trace amounts of it. They found that expression of the lamin B receptor affected neutrophil nuclear shape and chromatin distribution in a dose-dependent manner. Since the lamin B receptor may be a sterol reductase, loss of most LBR expression might lead to changes in sterol metabolism that cause developmental abnormalities, as has been shown for the highly homologous delta-7 sterol reductase (DHCR7; 602858), which is mutant in Smith-Lemli-Opitz syndrome (270400).

Following linkage studies in 2 families with Pelger-Huet anomaly, Best et al. (2003) sequenced the LBR gene and identified 2 mutations present in heterozygous state (600024.0004-600024.0005). In addition, the LBR gene was sequenced in a single English man with Pelger-Huet anomaly and a third mutation was identified (600024.0006).

Greenberg Dysplasia

Greenberg dysplasia (GRBGD; 215140), also known as hydrops-ectopic calcification-moth-eaten (HEM) skeletal dysplasia, is an autosomal recessive chondrodystrophy with a lethal course, characterized by fetal hydrops, short limbs, and abnormal chondroosseous calcification. Waterham et al. (2003) found elevated levels of cholesta-8,14-dien-3-beta-ol in cultured skin fibroblasts of an 18-week-old fetus with HEM skeletal dysplasia, compatible with a deficiency of the cholesterol biosynthetic enzyme 3-beta-hydroxysterol delta(14)-reductase. Sequence analysis of 2 candidate genes encoding putative human 3-beta-hydroxysterol delta(14)-reductases, TM7SF2 (603414) and LBR, identified a mutation in the LBR gene that resulted in a truncated protein (600024.0003). The healthy mother showed hypolobulated nuclei in 60% of her granulocytes. Waterham et al. (2003) thus suggested that classic Pelger-Huet anomaly represents the heterozygous state of 3-beta-hydroxysterol delta(14)-reductase deficiency. Waterham et al. (2003) stated that HEM skeletal dysplasia was the sixth inherited disorder of cholesterol biosynthesis for which the molecular basis was resolved. An abnormal granulocyte chromatin structure occurs in heterozygous and homozygous individuals with Pelger-Huet anomaly and severe skeletal abnormalities occur in individuals with homozygous HEM skeletal dysplasia, which indicates that the lamin B receptor has 2 different physiologic functions: preserving chromatin structure by promoting heterochromatin binding to the inner nuclear membrane (Ye and Worman, 1994) and functioning as the primary sterol delta(14)-reductase in human cholesterol biosynthesis. Waterham et al. (2003) stated that the latter function was somewhat unexpected, as all enzymes involved in the postsqualene cholesterol biosynthesis pathway had been localized to the ER membrane, whereas the lamin B receptor is present (at least predominantly) in the inner nuclear membrane. In this respect, the gene product of TM7SF2 seemed a priori a better candidate because it is localized in the ER membrane and also exhibits sterol delta(14)-reductase activity.

Wassif et al. (2007) studied mice with deficits of Lbr and/or Tm7sf2, another sterol delta(14)-reductase, and demonstrated that these proteins provide substantial enzymatic redundancy with respect to cholesterol synthesis; they concluded, therefore, that HEM dysplasia is a laminopathy rather than an inborn error of cholesterol synthesis.

In 3 unrelated fetuses with Greenberg dysplasia, Clayton et al. (2010) identified homozygous or compound heterozygous mutations in the LBR gene (600024.0008-600024.0011). A parent who was heterozygous for a missense mutation in the sterol reductase domain had no abnormalities of peripheral blood cells, whereas this missense mutation was shown to result in a loss of sterol reductase activity. Cellular studies showed localization of LBR outside of the nuclear membrane, where it colocalized with markers of the endoplasmic reticulum. Nonnuclear LBR was also expressed in lymphoblastoid cells, differentiated osteoclasts, and osteosarcoma cells, as well as in various tissues of developing mouse embryos. These findings suggested to Clayton et al. (2010) that Greenberg dysplasia results from defects in the sterol reductase activity of LBR, not from the structural function of LBR as part of the nuclear membrane. The uncoupling of the metabolic and structural functions of LBR explained how mutations in the same gene can cause distinct disorders. The findings also indicated that sterol reductase function is essential for intrauterine development in humans.

In a fetus with Greenberg dysplasia who had a presumed diagnosis of achondrogenesis-1A (200600), Wehrle et al. (2018) performed Sanger sequencing of the TRIP11 gene (604505) and did not demonstrate molecular confirmation of the clinical and radiographic diagnosis. They then performed whole-exome sequencing and identified a novel homozygous splice site mutation in the LBR gene (600024.0019). The mutation, which was confirmed by Sanger sequencing, was found in heterozygous state in the unaffected parents. LBR mRNA in patient-derived fibroblasts was barely detectable by real-time PCR, compatible with nonsense-mediated decay. Western blot analysis and immunofluorescence demonstrated that the fetal cells were completely devoid of LBR protein.

By whole-exome sequencing in 2 sib fetuses with Greenberg dysplasia, Giorgio et al. (2019) identified a homozygous missense mutation in the LBR gene (D460R; 600024.0020). The parents were heterozygous for the mutation.

Rhizomelic Skeletal Dysplasia with or without Pelger-Huet Anomaly

By sequence analysis of the LBR gene in an adopted 12-year-old girl with rhizomelic skeletal dysplasia with Pelger-Huet anomaly (SKPHA; 618019), Borovik et al. (2013) identified compound heterozygosity for 2 mutations (600024.0012-600024.0013).

Sobreira et al. (2014) identified compound heterozygous mutations (R76X, 600024.0014 and N547S, 600024.0015) in the LBR gene in a 15-year-old boy with mild skeletal anomalies and PHA. The N547S mutation was present in heterozygosity in the mother and unaffected brothers of the proband, and neither mutation was identified in the father. The mutations were identified by whole-exome sequencing and confirmed by Sanger sequencing.

By exome sequencing in 2 unrelated patients with short stature, spondylometaphyseal dysplasia, and spontaneously improving rhizomelic limb shortening, Thompson et al. (2019) identified compound heterozygous and homozygous mutations in the LBR gene (see, e.g., R502G, 600024.0016 and R583L, 600024.0017). Pelger-Huet anomaly was present in patient 1 but was not ascertained in patient 2.

Using a gene panel targeting skeletal disorders, Collins et al. (2020) identified a homozygous missense mutation in the LBR gene (L456V; 600024.0018) in 2 middle-aged sisters with short stature with predominant rhizomelia of the upper limbs and mesomelia of the lower limbs without Pelger-Huet anomaly. Homozygosity was confirmed in patient 2 by Sanger sequencing.

Reynolds Syndrome

In a 76-year-old Caucasian woman with Reynolds syndrome (613471), comprising primary biliary sclerosis, scleroderma, Raynaud phenomenon, and telangiectasia, Gaudy-Marqueste et al. (2010) identified a heterozygous mutation in the LBR gene (R372C; 600024.0007). Blood smear did not show Pelger-Huet anomaly. Studies of patient lymphoblastoid cells did not show abnormalities, but patient fibroblasts showed decreased LBR and decreased levels of lamin proteins, as well as dysmorphic nuclei with mottled chromatin. These findings suggested that the R372C mutation exerted a dominant-negative effect on LBR-interacting proteins, perhaps resulting from decreased stabilization of the mutant protein and increased proteosome-mediated degradation.


Animal Model

In 2 independent mouse strains with an associated Pelger-Huet anomaly blood phenotype (Green et al., 1975), Hoffmann et al. (2002) found 1 frameshift and 1 nonsense mutation in the Lbr gene.

Mice with the 'ichthyosis' (ic) phenotype display marked abnormalities in nuclear heterochromatin, similar to those observed in Pelger-Huet anomaly (PHA). Shultz et al. (2003) observed that mice homozygous for deleterious mutations at the ic locus present with a blood phenotype similar to PHA and develop other phenotypic abnormalities, including alopecia, variable expression of syndactyly, and hydrocephalus. The ic locus on mouse chromosome 1 shares conserved synteny with the chromosomal location of the human LBR locus on human chromosome 1. Shultz et al. (2003) identified 1 nonsense and 2 frameshift mutations within the Lbr gene of mice homozygous for 1 of 3 independent mutations (ic, icJ, or ic4J, respectively) at the ichthyosis locus. These allelic mutations resulted in a truncated or severely impaired protein. Tissues from mice homozygous for the icJ mutation revealed a complete loss of Lbr protein, as shown by immunofluorescence microscopy and immunoblotting.

Using a gene-trap (GT) method, Cohen et al. (2008) created mice homozygous for an insertion into exon 9 of the Lbr gene (Lbr GT/GT mice), resulting in a C-terminally truncated protein. Lbr GT/GT mice exhibited embryonic lethality with incomplete penetrance, shortened postnatal life span, hydrocephaly, and syndactyly, as well as chromatin atypia in neutrophils. Lbr GT/GT fibroblasts had wrinkled nuclei or smooth nuclei associated with micronuclei, as well as mislocalized nuclear proteins. Granulocyte number was enhanced in Lbr GT/GT mice, and mutant granulocytes lacked mature segmented nuclei, with a block in late maturation. However, mutant granulocytes showed normal ability to kill bacteria.


ALLELIC VARIANTS ( 20 Selected Examples):

.0001 PELGER-HUET ANOMALY

RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY, INCLUDED
LBR, 6-BP DEL, IVS12AS, -5-10
  
RCV000010135...

Pelger-Huet Anomaly

Pelger-Huet anomaly (PHA; 169400) is unusually frequent in the mountain village of Gelenau in southeastern Germany (Karl, 1967). To identify the genetic cause of Pelger-Huet anomaly, Hoffmann et al. (2002) studied 11 families from Gelenau with 18 unaffected and 29 affected members. In all of the families, neutrophils of affected individuals had bilobed or rod-like nuclei. Hoffmann et al. (2002) identified 3 related haplotypes associated with PHA, which indicated the presence of a founder haplotype in 10 of the 11 families. Although ancestral recombination events had eroded this founder haplotype, 10 families shared a crucial region defined by 2 particular markers. All 10 families sharing the founder haplotype were found by Hoffmann et al. (2002) to have a heterozygous deletion of 6 bp in the acceptor splice site region of intron 12 of the LBR gene. The deletion involved nucleotides -5 to -10 at the 3-prime end of intron 12. Although the mutation did not directly affect the consensus splice acceptor site, cDNA analysis showed that exon 13 was missing in the processed transcript sequence, which confirmed the functional disruption of this splice site.

Rhizomelic Skeletal Dysplasia with Pelger-Huet Anomaly

In 1 family (family P02) in the village of Gelenau studied by Hoffmann et al. (2002) in which the parents with PHA were heterozygous for the 6-bp deletion, their son (patient 8387) was presumably homozygous. This individual had neutrophils with round, nonsegmented nuclei and had presented at age 20 months with developmental delay, disproportionate body habitus, macrocephaly with prominent forehead, ventricular septal defect, and short metacarpals (SKPHA; 618019).


.0002 PELGER-HUET ANOMALY

LBR, IVS2AS, A-G, -2
   RCV000010136

In 1 (family F10) of 11 families with Pelger-Huet anomaly (169400) residing in Gelenau, Hoffmann et al. (2002) found a splice acceptor site mutation in intron 2 of the LBR gene. The family showed a different haplotype from that of other families in the same region who shared a founder haplotype, and was found to have ancestry outside the region of Gelenau.


.0003 GREENBERG DYSPLASIA

PELGER-HUET ANOMALY, INCLUDED
LBR, 7-BP SUB, NT1599
  
RCV000010137...

Waterham et al. (2003) described a fetus, the product of a consanguineous Turkish marriage, who presented with intrauterine growth retardation at 17 weeks' gestation and was found to have severe hydrops and short-limb skeletal dysplasia consistent with thanatophoric dysplasia. Intrauterine death occurred at 18 weeks, and delivery was induced. Fetal examination showed severe hydrops, extremely shortened edematous limbs, and postaxial polydactyly on both hands. Radiographic examination showed severe platyspondyly, short irregular ribs, a 'moth-eaten' aspect of scapular and pelvic bones, and very short tubular bones with angular diaphyses. Histopathology showed almost complete absence of ossification, severe disorganization of cartilage (with nodular calcification deposits), and defective or absent joint formation. On the basis of these findings, the diagnosis of Greenberg dysplasia (215140) was made. Elevated levels of cholesta-8,14-dien-3-beta-ol in cultured skin fibroblasts were consistent with deficiency of 3-beta-hydroxysterol delta(14)-reductase. Sequence analysis of the LBR gene identified a homozygous 7-bp substitution at nucleotide 1599 in exon 13, TCTTCTA-CTAGAAG, which resulted in a truncated protein. The mother showed classic Pelger-Huet anomaly (169400), which represents the heterozygous state of 3-beta-hydroxysterol delta(14)-reductase deficiency.


.0004 PELGER-HUET ANOMALY

LBR, PRO119LEU
   RCV000010138...

In a family from Slovakia, Best et al. (2003) found that Pelger-Huet anomaly (169400) was associated with a C-to-T transition in exon 3 of the LBR gene, changing codon 119 from CCG (pro) to CTG (leu) (P119L).


.0005 PELGER-HUET ANOMALY

LBR, IVS11AS, A-G, -9
   RCV000010139

In a family from southern Italy, Best et al. (2003) identified association of Pelger-Huet anomaly (169400) with a splice acceptor site mutation in the LBR gene: IVS11-9A-G.


.0006 PELGER-HUET ANOMALY

LBR, PRO569ARG
   RCV000010140

In an English man with Pelger-Huet anomaly (169400), Best et al. (2003) identified a heterozygous C-to-G transversion in exon 14 of the LBR gene, resulting in a pro569-to-arg (P569R) substitution.


.0007 REYNOLDS SYNDROME (1 patient)

LBR, ARG372CYS
  
RCV000010141...

In a 76-year-old Caucasian woman with Reynolds syndrome (613471), Gaudy-Marqueste et al. (2010) identified a heterozygous 1114C-T transition in exon 9 of the LBR gene, resulting in an arg372-to-cys (R372C) substitution in a highly conserved residue between the fourth and fifth transmembrane domains in the C terminus. The mutation was not found in 400 control chromosomes. The patient had a long history of Raynaud phenomenon, telangiectasia, mild cholestasis associated with mitochondrial autoantibodies consistent with primary biliary cirrhosis, and limited cutaneous scleroderma. Blood smear did not show Pelger-Huet anomaly. Studies of patient lymphoblastoid cells did not show abnormalities, but patient fibroblasts showed decreased LBR and decreased levels of lamin proteins, as well as dysmorphic nuclei with mottled chromatin. These findings suggested that the R372C mutation exerted a dominant-negative effect on LBR-interacting proteins, perhaps resulting from decreased stabilization of the mutant protein and increased proteosome-mediated degradation. Gaudy-Marqueste et al. (2010) hypothesized that the mutation caused a global perturbation of the nuclear envelope protein network.


.0008 GREENBERG DYSPLASIA

LBR, ASN547ASP
  
RCV000087263...

In a fetus, the product of consanguineous Greek parents, with Greenberg dysplasia (GRBGD; 215140), Konstantinidou et al. (2008) identified a homozygous c.1639A-G transition in exon 13 of the LBR gene, resulting in an asn547-to-asp (N547D) substitution in a conserved residue in the C terminus. Each unaffected parent was heterozygous for the mutation, which was not found in 200 control Greek chromosomes.

Clayton et al. (2010) found that the consanguineous parents of a fetus with Greenberg dysplasia were heterozygous for the N547D mutation. Biologic material from the affected fetus was not available. The mutation was not found in 150 controls. The N547D substitution occurred at a highly conserved residue in the sterol reductase domain. Whereas wildtype LBR rescued a C14 sterol-reductase mutant yeast strain, N547D was only partially able to compensate. There was restoration of ergosterol, but transfected yeast also showed abnormal accumulation of 4-methylzymosterol and ignosterol.


.0009 GREENBERG DYSPLASIA

LBR, ARG583GLN
  
RCV000087264

In a fetus with Greenberg dysplasia (GRBGD; 215140), previously reported by Offiah et al. (2003), Clayton et al. (2010) identified compound heterozygosity for 2 mutations in the LBR gene: a c.1748G-A transition, resulting in an arg583-to-gln (R583Q) substitution at a highly conserved residue in the sterol reductase domain, and a 4-bp deletion (c.32delTGGT; 600024.0010), resulting in a frameshift and premature termination (Val11GlufsTer24). The R583Q mutation was not found in 150 controls. Analysis of parental peripheral blood cells showed that the mother, who carried the 4-bp deletion, had Pelger-Huet anomaly (169400), whereas the father, who carried the R583Q mutation, had normal neutrophils. Transfection of the R583Q mutation into a C14 sterol-reductase mutant yeast strain showed that the mutant protein was unable to compensate for the defect, and no ergosterol was produced. There was also abnormal accumulation of ignosterol.


.0010 GREENBERG DYSPLASIA

PELGER-HUET ANOMALY, INCLUDED
LBR, 4-BP DEL, 32TGGT
  
RCV000087265...

For discussion of the 4-bp deletion in the LBR gene (c.32delTGGT) that was found in compound heterozygous state in a fetus with Greenberg dysplasia (GRBGD; 215140) by Clayton et al. (2010), see 600024.0009. The mother of the fetus was heterozygous for the 4-bp deletion and had Pelger-Huet anomaly (169400).


.0011 GREENBERG DYSPLASIA

LBR, 1-BP DEL, 1402T
  
RCV000087267

In a fetus with Greenberg dysplasia (GRBGD; 215140), Clayton et al. (2010) identified a homozygous 1-bp deletion (c.1402delT) in the LBR gene, resulting in a frameshift and premature termination (Tyr468ThrfsTer475). The mutation was not present in 150 controls. The numbering of the mutation was discordant in the text (c.1492delT) versus the supplementary material (c.1402delT).


.0012 RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, 10-BP DEL/INS
  
RCV001824058

In a 12-year-old adopted girl with mild skeletal anomalies and Pelger-Huet anomaly (SKPHA; 618019), Borovik et al. (2013) identified compound heterozygous mutations in the LBR gene: an insertion/deletion mutation (c.631_653delinsTGATGAGAAA) in exon 6, resulting in a frameshift and a premature termination codon (Ile218AspfsTer19), and a c.1757G-A transition in exon 14, resulting in an arg586-to-his (R586H; 600024.0013) at a conserved residue. The c.1757G-A variant was not found in 1,092 individuals in the 1000 Genome Project database or in 6,503 individuals in NHLBI Exome Sequencing Project database. The authors noted that the patient had dumbbell-shaped neutrophil nuclei characteristic of heterozygotes, suggesting that one of the mutations does not result in complete loss of LBR protein. No functional studies were reported.


.0013 RHIZOMELIC SKELETAL DYSPLASIA WITH OR WITHOUT PELGER-HUET ANOMALY

LBR, ARG586HIS
  
RCV000656653...

For discussion of the c.1757G-A transition in the LBR gene, resulting in an arg586-to-his (R586H) substitution, that was found in compound heterozygous state in a patient with mild skeletal anomalies with Pelger-Huet anomaly (SKPHA; 618019) by Borovik et al. (2013), see 600024.0012.


.0014 RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, ARG76TER
  
RCV000210455...

In a 15-year-old boy with mild skeletal anomalies with Pelger-Huet anomaly (SKPHA; 618019), Sobreira et al. (2014) identified compound heterozygous mutations in the LBR gene: an arg76-to-ter (R76X) substitution in exon 3 and an asn547-to-ser (N547S; 600024.0015) substitution in exon 13. The mother and the unaffected brothers of the proband were heterozygous for the N547S mutation, and the father did not have either mutation. The mutations were found by whole-exome sequencing and confirmed by Sanger sequencing. No functional studies were reported.


.0015 RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, ASN547SER
  
RCV000210471...

For discussion of the asn547-to-ser (N547S) mutation in the LBR gene that was identified in a boy with mild skeletal anomalies with Pelger-Huet anomaly (SKPHA; 618019) by Sobreira et al. (2014), see 600024.0014.


.0016 RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, ARG502GLY
  
RCV000493673...

In a girl (patient 1) with short stature, spondylometaphyseal dysplasia, spontaneously improving rhizomelic limb shortening and Pelger-Huet anomaly (SKPHA; 618019), Thompson et al. (2019) identified compound heterozygous mutations in the LBR gene: a c.1504C-G transversion in exon 12 of the LBR gene, resulting in an arg502-to-gly (R502G) substitution, and a c.1748G-T transversion in exon 14, resulting in an arg583-to-leu (R583L) substitution (600024.0017). Her father was heterozygous for the mutation.


.0017 RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, ARG58LEU
  
RCV000480212...

For discussion of the c.1748G-T transversion in exon 14 of the LBR gene, resulting in an arg58-to-leu (R58L) substitution, that was identified in compound heterozygous state in a patient with rhizomelic skeletal dysplasia with Pelger-Huet anomaly (SKPHA; 618019) by Thompson et al. (2019), see 600024.0016.


.0018 RHIZOMELIC SKELETAL DYSPLASIA WITHOUT PELGER-HUET ANOMALY

LBR, LEU456VAL
  
RCV000489302...

In 2 middle-aged sisters with short stature with predominant rhizomelia of the upper limbs and mesomelia of the lower limbs without Pelger-Huet anomaly (SKPHA; 618019), Collins et al. (2020) identified a homozygous c.1366C-G transversion (c.1366C-G, NM_002296.4) in exon 11 of the LBR gene, resulting in a leu456-to-val (L456V) substitution.


.0019 GREENBERG DYSPLASIA

LBR, c.366+1G-T
  
RCV001824087

In a patient, born to consanguineous Turkish parents, with Greenberg dysplasia (GRBGD; 215140), who had a presumed diagnosis of achondrogenesis 1A, Wehrle et al. (2018) detected a homozygous c.366+1G-T transversion that abolishes the splice donor site of exon 3. The nucleotide change was validated by Sanger sequencing. The parents were heterozygous for the mutation. Molecular characterization of patient-derived fibroblasts demonstrated missplicing of exon 3, resulting in a frameshift and premature termination (Glu111SerfsTer39). LBR mRNA was barely detectable by real-time PCR, compatible with nonsense-mediated decay. Western blot analysis and immunofluorescence demonstrated that the fetal cells were completely devoid of LBR protein.


.0020 GREENBERG DYSPLASIA

LBR, ASP460ARG
  
RCV001824088

In 2 sib fetuses with Greenberg dysplasia (GRBGD; 215140), Giorgio et al. (2019) identified a homozygous c.1379A-G transition in the LBR gene, resulting in an asp460-to-arg (D460R) substitution. The mutation, which was identified by whole-exome sequencing and confirmed by Sanger sequencing, was present in heterozygous state in the parents.


REFERENCES

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  6. Collins, M., Miranda, V., Rousseau, J., Kratz, L. E., Campeau, P. M. A homozygous variant in the lamin B receptor gene LBR results in a non-lethal skeletal dysplasia without Pelger-Huet anomaly. Bone 141: 115601, 2020. [PubMed: 32827848, related citations] [Full Text]

  7. Courvalin, J.-C., Lassoued, K., Worman, H. J., Blobel, G. Identification and characterization of autoantibodies against the nuclear envelope lamin B receptor from patients with primary biliary cirrhosis. J. Exp. Med. 172: 961-967, 1990. [PubMed: 2167346, related citations] [Full Text]

  8. Gaudy-Marqueste, C., Roll, P., Esteves-Vieira, V., Weiller, P.-J., Grob, J. J., Cau, P., Levy, N., De Sandre-Giovannoli, A. LBR mutation and nuclear envelope defects in a patient affected with Reynolds syndrome. J. Med. Genet. 47: 361-370, 2010. [PubMed: 20522425, related citations] [Full Text]

  9. Giorgio, E., Sirchia, F., Bosco, M., Sobreira, N. L. M., Baylor-Hopkins Center for Mendelial Genomics, Grosso, E., Brussino, A., Brusco, A. A novel case of Greenberg dysplasia and genotype-phenotype correlation analysis of LBR pathogenic variants: an instructive example of one gene-multiple phenotypes. Am. J. Med. Genet. 179A: 306-311, 2019. [PubMed: 30561119, images, related citations] [Full Text]

  10. Green, M. C., Shultz, L. D., Nedzi, L. A. Abnormal nuclear morphology of leukocytes in the mouse mutant ichthyosis: a possible transplantation marker. Transplantation 20: 172-175, 1975. [PubMed: 1101484, related citations]

  11. Hoffmann, K., Dreger, C. K., Olins, A. L., Olins, D. E., Shultz, L. D., Lucke, B., Karl, H., Kaps, R., Muller, D., Vaya, A., Aznar, J., Ware, R. E., Cruz, N. S., Lindner, T. H., Herrmann, H., Reis, A., Sperling, K. Mutations in the gene encoding the lamin B receptor produce an altered nuclear morphology in granulocytes (Pelger-Huet anomaly). Nature Genet. 31: 410-414, 2002. [PubMed: 12118250, related citations] [Full Text]

  12. Karl, H. Die besondere Haufund von Merkmalstragern der Pelger-Huet-Kernanomalie der Leukozyten in Gelenau im Erzgebirge. (Thesis) Humboldt Univ.: Berlin, Germany 1967.

  13. Konstantinidou, A., Karadimas, C., Waterham, H. R., Superti-Furga, A., Kaminopetros, P., Grigoriadou, M., Kokotas, H., Agrogiannis, G., Giannoulia-Karantana, A., Patsouris, E., Petersen, M. B. Pathologic, radiographic and molecular findings in three fetuses diagnosed with HEM/Greenberg skeletal dysplasia. Prenatal Diag. 28: 309-312, 2008. [PubMed: 18382993, related citations] [Full Text]

  14. Nachtsheim, H. The Pelger-anomaly in man and rabbit. J. Hered. 41: 131-137, 1950. [PubMed: 15436969, related citations] [Full Text]

  15. Offiah, A. C., Mansour, S., Jeffrey, I., Nash, R., Whittock, N., Pyper, R., Bewley, S., Clayton, P. T., Hall, C. M. Greenberg dysplasia (HEM) and lethal X linked dominant Conradi-Hunermann chondrodysplasia punctata (CDPX2): presentation of two cases with overlapping phenotype. J. Med. Genet. 40: e129, 2003. Note: Electronic Article. [PubMed: 14684697, related citations] [Full Text]

  16. Schuler, E., Lin, F., Worman, H. J. Characterization of the human gene encoding LBR, an integral protein of the nuclear envelope inner membrane. J. Biol. Chem. 269: 11312-11317, 1994. [PubMed: 8157663, related citations]

  17. Shultz, L. D., Lyons, B. L., Burzenski, L. M., Gott, B., Samuels, R., Schweitzer, P. A., Dreger, C., Herrmann, H., Kalscheuer, V., Olins, A. L., Olins, D. E., Sperling, K., Hoffmann, K. Mutations at the mouse ichthyosis locus are within the lamin B receptor gene: a single gene model for human Pelger-Huet anomaly. Hum. Molec. Genet. 12: 61-69, 2003. [PubMed: 12490533, related citations] [Full Text]

  18. Sobreira, N., Modaff, P., Steel, G., You, J., Nanda, S., Hoover-Fong, J., Valle, D., Pauli, R. M. An anadysplasia-like, spontaneously remitting spondylometaphyseal dysplasia secondary to lamin B receptor (LBR) gene mutations: further definition of the phenotypic heterogeneity of LBR-bone dysplasias. Am. J. Med. Genet. 167A: 159-163, 2014. [PubMed: 25348816, images, related citations] [Full Text]

  19. Thompson, E., Abdalla, E., Superti-Furga, A., McAlister, W., Kratz, L., Unger, S., Royer-Bertrand, B., Campos-Xavier, B., Mittaz-Crettol, L., Amin, A. K., DeSanto, C., Wilson, D. B., Douglas, G., Kozel, B., Shinawi, M. Lamin B receptor-related disorder is associated with a spectrum of skeletal dysplasia phenotypes. Bone 120: 354-363, 2019. [PubMed: 30448303, related citations] [Full Text]

  20. Wassif, C. A., Brownson, K. E., Sterner, A. L., Forlino, A., Zerfas, P. M., Wilson, W. K., Starost, M. F., Porter, F. D. HEM dysplasia and ichthyosis are likely laminopathies and not due to 3-beta-hydroxysterol delta-14-reductase deficiency. Hum. Molec. Genet. 16: 1176-1187, 2007. [PubMed: 17403717, related citations] [Full Text]

  21. Waterham, H. R., Koster, J., Mooyer, P., van Noort, G., Kelley, R. I., Wilcox, W. R., Wanders, R. J. A., Hennekam, R. C. M., Oosterwijk, J. C. Autosomal recessive HEM/Greenberg skeletal dysplasia is caused by 3-beta-hydroxysterol delta(14)-reductase deficiency due to mutations in the lamin B receptor gene. Am. J. Hum. Genet. 72: 1013-1017, 2003. [PubMed: 12618959, images, related citations] [Full Text]

  22. Wehrle, A., Witkos, T. M., Schneider, J. C., Hoppmann, A., Behringer, S., Kottgen, A., Elting, M., Spranger, J., Lowe, M., Lausch, E. A common pathomechanism in GMAP-210- and LBR-related diseases. JCI Insight 3: e121150, 2018. [PubMed: 30518689, images, related citations] [Full Text]

  23. Worman, H. J., Yuan, J., Blobel, G., Georgatos, S. D. A lamin B receptor in the nuclear envelope. Proc. Nat. Acad. Sci. 85: 8531-8534, 1988. [PubMed: 2847165, related citations] [Full Text]

  24. Wydner, K. L., McNeil, J. A., Lin, F., Worman, H. J., Lawrence, J. B. Chromosomal assignment of human nuclear envelope protein genes LMNA, LMNB1, and LBR by fluorescence in situ hybridization. Genomics 32: 474-478, 1996. [PubMed: 8838815, related citations] [Full Text]

  25. Ye, Q., Worman, H. J. Primary structure analysis and lamin B and DNA binding of human LBR, an integral protein of the nuclear envelope inner membrane. J. Biol. Chem. 269: 11306-11311, 1994. [PubMed: 8157662, related citations]


Kelly A. Przylepa - updated : 02/03/2022
Carol A. Bocchini - updated : 06/21/2018
Cassandra L. Kniffin - updated : 2/26/2014
Patricia A. Hartz - updated : 1/8/2014
Patricia A. Hartz - updated : 11/23/2011
Marla J. F. O'Neill - updated : 1/20/2011
Cassandra L. Kniffin - updated : 7/7/2010
George E. Tiller - updated : 10/26/2004
Victor A. McKusick - updated : 1/23/2004
Victor A. McKusick - updated : 4/11/2003
Victor A. McKusick - updated : 8/29/2002
Victor A. McKusick - updated : 7/16/2002
Alan F. Scott- updated : 4/22/1996
Creation Date:
Victor A. McKusick : 7/12/1994
joanna : 03/17/2022
carol : 02/04/2022
carol : 02/03/2022
alopez : 12/01/2020
carol : 06/25/2019
alopez : 06/24/2019
carol : 06/21/2018
alopez : 09/23/2016
carol : 09/16/2015
mcolton : 8/18/2015
carol : 2/27/2014
mcolton : 2/27/2014
ckniffin : 2/26/2014
carol : 2/25/2014
mgross : 1/8/2014
mcolton : 12/18/2013
alopez : 10/3/2012
mgross : 12/9/2011
terry : 11/23/2011
wwang : 2/2/2011
terry : 1/20/2011
wwang : 7/12/2010
ckniffin : 7/7/2010
terry : 12/17/2009
tkritzer : 10/26/2004
carol : 4/7/2004
tkritzer : 1/29/2004
terry : 1/23/2004
tkritzer : 4/23/2003
tkritzer : 4/21/2003
tkritzer : 4/21/2003
tkritzer : 4/21/2003
tkritzer : 4/21/2003
tkritzer : 4/21/2003
terry : 4/11/2003
tkritzer : 11/19/2002
alopez : 9/4/2002
terry : 8/29/2002
alopez : 8/1/2002
alopez : 7/22/2002
cwells : 7/16/2002
cwells : 7/16/2002
terry : 4/22/1996
mark : 4/22/1996
mark : 5/9/1995
mimadm : 7/30/1994
jason : 7/12/1994

* 600024

LAMIN B RECEPTOR; LBR


Alternative titles; symbols

LMN2R


HGNC Approved Gene Symbol: LBR

SNOMEDCT: 1237412001, 389261002, 715401008, 85559002;  


Cytogenetic location: 1q42.12     Genomic coordinates (GRCh38): 1:225,401,502-225,428,821 (from NCBI)


Gene-Phenotype Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
1q42.12 ?Reynolds syndrome 613471 Autosomal dominant 3
Greenberg skeletal dysplasia 215140 Autosomal recessive 3
Pelger-Huet anomaly 169400 Autosomal dominant 3
Rhizomelic skeletal dysplasia with or without Pelger-Huet anomaly 618019 Autosomal recessive 3

TEXT

Description

The LBR gene encodes the lamin B receptor, an inner nuclear membrane protein that binds lamin B (LMNB1; 150340 and LMNB2; 150341). The nuclear envelope is composed of the nuclear lamina, the nuclear pore complexes, and the nuclear membranes. The nuclear membranes can be divided into 3 morphologically distinct but interconnected domains: the outer nuclear membrane, the inner nuclear membrane, and the nuclear pore membrane. The inner nuclear membrane is adjacent to the nuclear lamina, a meshwork of intermediate filament proteins termed lamins. The nuclear lamina is a discontinuous structure that occupies only a fraction of the nuclear periphery, and at some points, the inner nuclear membrane may interact directly with the chromatin. Several integral proteins of the nuclear envelope inner membrane that may be associated with the lamina and the chromatin have been identified (summary by Ye and Worman, 1994).


Cloning and Expression

Ye and Worman (1994) isolated clones corresponding to the LBR gene from a HeLa cell cDNA library. The deduced 615-residue protein showed 68% amino acid identity with the chicken lamin B receptor. The LBR protein has a basic nucleoplasmic N-terminal domain of 208 amino acids followed by a hydrophobic domain with 8 putative transmembrane segments. Phosphorylation sites were also identified. The LBR N-terminal domain precipitated lamin B from nuclear extracts and associated with DNA. The stretch between amino acids 71 and 100, which contains a ser/arg-rich stretch, was necessary for DNA binding. The findings suggested that LBR can potentially mediate the interaction of both the nuclear lamina and the chromatin with the inner nuclear membrane.

Worman et al. (1988) cloned avian lamin B receptor (LBR) that binds in vitro to lamin B. Subsequently, Courvalin et al. (1990) identified a mammalian homolog of avian LBR was identified by cross-reactive autoantibodies from patients with primary biliary cirrhosis.

In fibroblasts and HeLa cells, Clayton et al. (2010) found localization of LBR outside of the nuclear membrane, where it colocalized with markers of the endoplasmic reticulum. LBR was also expressed in lymphoblastoid cells, differentiated osteoclasts, and osteosarcoma cells. Developing mouse embryos showed strong Lbr expression in the liver, lung, midgut, skin, brain, and developing cartilage. Lbr was also detected in growth plate cartilage, osteoblasts, and connective tissue fibroblasts.


Gene Structure

Schuler et al. (1994) showed by restriction mapping that the human LBR transcription unit spans approximately 35 kb. A transcription start site is located approximately 4 kb 5-prime to the translation initiation codon. The LBR gene contains 13 protein-coding exons. The nucleoplasmic domain is encoded by exons 1 to 4, and the hydrophobic domain, with 8 putative transmembrane segments, is encoded by exons 5 to 13. The hydrophobic domain is homologous to 3 yeast polypeptides, suggesting that this higher eukaryotic gene may have evolved through recombination between a gene that encoded a soluble nuclear protein and a membrane protein gene similar to those in yeast.


Mapping

Wydner et al. (1996) mapped the LBR gene to chromosome 1q42.1 by fluorescence in situ hybridization.


Gene Function

Differentiation of olfactory sensory neurons is characterized by expression of a single olfactory receptor. Clowney et al. (2012) found that silenced olfactory receptor genes from different chromosomes converged into approximately 5 distinct foci within nuclei of mouse olfactory sensory neurons. The active olfactory receptor gene was absent from these foci. Clowney et al. (2012) found that loss of Lbr expression was critical for chromatin compaction and silencing of olfactory receptor genes. Expression of Lbr in mouse olfactory sensory neurons caused redistribution of olfactory receptor gene foci to the nuclear envelope, concomitant with loss of specific olfactory receptor gene expression by individual neurons. Lbr expression did not alter expression of nonolfactory receptor genes and did not alter the distribution of primary heterochromatin marks. Clowney et al. (2012) concluded that the primary epigenetic signature silencing olfactory receptor genes is reinforced by secondary and tertiary repressive organization and that absence of LBR is required for formation of the necessary higher-order repressive heterochromatin.


Molecular Genetics

Pelger-Huet Anomaly

Pelger-Huet anomaly (169400) is an autosomal dominant disorder characterized by abnormal nuclear shape and chromatin organization in blood granulocytes. Affected individuals show hypolobulated neutrophil nuclei with coarse chromatin. Presumed homozygous individuals have ovoid neutrophil nuclei, as well as varying degrees of developmental delay, epilepsy, and skeletal abnormalities. Homozygous offspring in an extinct rabbit lineage showed severe chondrodystrophy, developmental anomalies, and increased pre- and postnatal mortality in association with Pelger-Huet anomaly (Nachtsheim, 1950). By genomewide linkage scan, Hoffmann et al. (2002) showed that Pelger-Huet anomaly is linked to 1q41-q43. In the LBR gene, which resides in this region, they identified 4 splice site, 2 frameshift, and 2 nonsense mutations. The lamin B receptor, a member of the sterol reductase family, is evolutionarily conserved and integral to the inner nuclear membrane; it targets heterochromatin and lamins to the nuclear membrane. Hoffmann et al. (2002) found that lymphoblastoid cells from heterozygous individuals affected with Pelger-Huet anomaly showed reduced expression of the lamin B receptor, and cells homozygous with respect to Pelger-Huet anomaly contain only trace amounts of it. They found that expression of the lamin B receptor affected neutrophil nuclear shape and chromatin distribution in a dose-dependent manner. Since the lamin B receptor may be a sterol reductase, loss of most LBR expression might lead to changes in sterol metabolism that cause developmental abnormalities, as has been shown for the highly homologous delta-7 sterol reductase (DHCR7; 602858), which is mutant in Smith-Lemli-Opitz syndrome (270400).

Following linkage studies in 2 families with Pelger-Huet anomaly, Best et al. (2003) sequenced the LBR gene and identified 2 mutations present in heterozygous state (600024.0004-600024.0005). In addition, the LBR gene was sequenced in a single English man with Pelger-Huet anomaly and a third mutation was identified (600024.0006).

Greenberg Dysplasia

Greenberg dysplasia (GRBGD; 215140), also known as hydrops-ectopic calcification-moth-eaten (HEM) skeletal dysplasia, is an autosomal recessive chondrodystrophy with a lethal course, characterized by fetal hydrops, short limbs, and abnormal chondroosseous calcification. Waterham et al. (2003) found elevated levels of cholesta-8,14-dien-3-beta-ol in cultured skin fibroblasts of an 18-week-old fetus with HEM skeletal dysplasia, compatible with a deficiency of the cholesterol biosynthetic enzyme 3-beta-hydroxysterol delta(14)-reductase. Sequence analysis of 2 candidate genes encoding putative human 3-beta-hydroxysterol delta(14)-reductases, TM7SF2 (603414) and LBR, identified a mutation in the LBR gene that resulted in a truncated protein (600024.0003). The healthy mother showed hypolobulated nuclei in 60% of her granulocytes. Waterham et al. (2003) thus suggested that classic Pelger-Huet anomaly represents the heterozygous state of 3-beta-hydroxysterol delta(14)-reductase deficiency. Waterham et al. (2003) stated that HEM skeletal dysplasia was the sixth inherited disorder of cholesterol biosynthesis for which the molecular basis was resolved. An abnormal granulocyte chromatin structure occurs in heterozygous and homozygous individuals with Pelger-Huet anomaly and severe skeletal abnormalities occur in individuals with homozygous HEM skeletal dysplasia, which indicates that the lamin B receptor has 2 different physiologic functions: preserving chromatin structure by promoting heterochromatin binding to the inner nuclear membrane (Ye and Worman, 1994) and functioning as the primary sterol delta(14)-reductase in human cholesterol biosynthesis. Waterham et al. (2003) stated that the latter function was somewhat unexpected, as all enzymes involved in the postsqualene cholesterol biosynthesis pathway had been localized to the ER membrane, whereas the lamin B receptor is present (at least predominantly) in the inner nuclear membrane. In this respect, the gene product of TM7SF2 seemed a priori a better candidate because it is localized in the ER membrane and also exhibits sterol delta(14)-reductase activity.

Wassif et al. (2007) studied mice with deficits of Lbr and/or Tm7sf2, another sterol delta(14)-reductase, and demonstrated that these proteins provide substantial enzymatic redundancy with respect to cholesterol synthesis; they concluded, therefore, that HEM dysplasia is a laminopathy rather than an inborn error of cholesterol synthesis.

In 3 unrelated fetuses with Greenberg dysplasia, Clayton et al. (2010) identified homozygous or compound heterozygous mutations in the LBR gene (600024.0008-600024.0011). A parent who was heterozygous for a missense mutation in the sterol reductase domain had no abnormalities of peripheral blood cells, whereas this missense mutation was shown to result in a loss of sterol reductase activity. Cellular studies showed localization of LBR outside of the nuclear membrane, where it colocalized with markers of the endoplasmic reticulum. Nonnuclear LBR was also expressed in lymphoblastoid cells, differentiated osteoclasts, and osteosarcoma cells, as well as in various tissues of developing mouse embryos. These findings suggested to Clayton et al. (2010) that Greenberg dysplasia results from defects in the sterol reductase activity of LBR, not from the structural function of LBR as part of the nuclear membrane. The uncoupling of the metabolic and structural functions of LBR explained how mutations in the same gene can cause distinct disorders. The findings also indicated that sterol reductase function is essential for intrauterine development in humans.

In a fetus with Greenberg dysplasia who had a presumed diagnosis of achondrogenesis-1A (200600), Wehrle et al. (2018) performed Sanger sequencing of the TRIP11 gene (604505) and did not demonstrate molecular confirmation of the clinical and radiographic diagnosis. They then performed whole-exome sequencing and identified a novel homozygous splice site mutation in the LBR gene (600024.0019). The mutation, which was confirmed by Sanger sequencing, was found in heterozygous state in the unaffected parents. LBR mRNA in patient-derived fibroblasts was barely detectable by real-time PCR, compatible with nonsense-mediated decay. Western blot analysis and immunofluorescence demonstrated that the fetal cells were completely devoid of LBR protein.

By whole-exome sequencing in 2 sib fetuses with Greenberg dysplasia, Giorgio et al. (2019) identified a homozygous missense mutation in the LBR gene (D460R; 600024.0020). The parents were heterozygous for the mutation.

Rhizomelic Skeletal Dysplasia with or without Pelger-Huet Anomaly

By sequence analysis of the LBR gene in an adopted 12-year-old girl with rhizomelic skeletal dysplasia with Pelger-Huet anomaly (SKPHA; 618019), Borovik et al. (2013) identified compound heterozygosity for 2 mutations (600024.0012-600024.0013).

Sobreira et al. (2014) identified compound heterozygous mutations (R76X, 600024.0014 and N547S, 600024.0015) in the LBR gene in a 15-year-old boy with mild skeletal anomalies and PHA. The N547S mutation was present in heterozygosity in the mother and unaffected brothers of the proband, and neither mutation was identified in the father. The mutations were identified by whole-exome sequencing and confirmed by Sanger sequencing.

By exome sequencing in 2 unrelated patients with short stature, spondylometaphyseal dysplasia, and spontaneously improving rhizomelic limb shortening, Thompson et al. (2019) identified compound heterozygous and homozygous mutations in the LBR gene (see, e.g., R502G, 600024.0016 and R583L, 600024.0017). Pelger-Huet anomaly was present in patient 1 but was not ascertained in patient 2.

Using a gene panel targeting skeletal disorders, Collins et al. (2020) identified a homozygous missense mutation in the LBR gene (L456V; 600024.0018) in 2 middle-aged sisters with short stature with predominant rhizomelia of the upper limbs and mesomelia of the lower limbs without Pelger-Huet anomaly. Homozygosity was confirmed in patient 2 by Sanger sequencing.

Reynolds Syndrome

In a 76-year-old Caucasian woman with Reynolds syndrome (613471), comprising primary biliary sclerosis, scleroderma, Raynaud phenomenon, and telangiectasia, Gaudy-Marqueste et al. (2010) identified a heterozygous mutation in the LBR gene (R372C; 600024.0007). Blood smear did not show Pelger-Huet anomaly. Studies of patient lymphoblastoid cells did not show abnormalities, but patient fibroblasts showed decreased LBR and decreased levels of lamin proteins, as well as dysmorphic nuclei with mottled chromatin. These findings suggested that the R372C mutation exerted a dominant-negative effect on LBR-interacting proteins, perhaps resulting from decreased stabilization of the mutant protein and increased proteosome-mediated degradation.


Animal Model

In 2 independent mouse strains with an associated Pelger-Huet anomaly blood phenotype (Green et al., 1975), Hoffmann et al. (2002) found 1 frameshift and 1 nonsense mutation in the Lbr gene.

Mice with the 'ichthyosis' (ic) phenotype display marked abnormalities in nuclear heterochromatin, similar to those observed in Pelger-Huet anomaly (PHA). Shultz et al. (2003) observed that mice homozygous for deleterious mutations at the ic locus present with a blood phenotype similar to PHA and develop other phenotypic abnormalities, including alopecia, variable expression of syndactyly, and hydrocephalus. The ic locus on mouse chromosome 1 shares conserved synteny with the chromosomal location of the human LBR locus on human chromosome 1. Shultz et al. (2003) identified 1 nonsense and 2 frameshift mutations within the Lbr gene of mice homozygous for 1 of 3 independent mutations (ic, icJ, or ic4J, respectively) at the ichthyosis locus. These allelic mutations resulted in a truncated or severely impaired protein. Tissues from mice homozygous for the icJ mutation revealed a complete loss of Lbr protein, as shown by immunofluorescence microscopy and immunoblotting.

Using a gene-trap (GT) method, Cohen et al. (2008) created mice homozygous for an insertion into exon 9 of the Lbr gene (Lbr GT/GT mice), resulting in a C-terminally truncated protein. Lbr GT/GT mice exhibited embryonic lethality with incomplete penetrance, shortened postnatal life span, hydrocephaly, and syndactyly, as well as chromatin atypia in neutrophils. Lbr GT/GT fibroblasts had wrinkled nuclei or smooth nuclei associated with micronuclei, as well as mislocalized nuclear proteins. Granulocyte number was enhanced in Lbr GT/GT mice, and mutant granulocytes lacked mature segmented nuclei, with a block in late maturation. However, mutant granulocytes showed normal ability to kill bacteria.


ALLELIC VARIANTS 20 Selected Examples):

.0001   PELGER-HUET ANOMALY

RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY, INCLUDED
LBR, 6-BP DEL, IVS12AS, -5-10
SNP: rs886037616, ClinVar: RCV000010135, RCV001824015

Pelger-Huet Anomaly

Pelger-Huet anomaly (PHA; 169400) is unusually frequent in the mountain village of Gelenau in southeastern Germany (Karl, 1967). To identify the genetic cause of Pelger-Huet anomaly, Hoffmann et al. (2002) studied 11 families from Gelenau with 18 unaffected and 29 affected members. In all of the families, neutrophils of affected individuals had bilobed or rod-like nuclei. Hoffmann et al. (2002) identified 3 related haplotypes associated with PHA, which indicated the presence of a founder haplotype in 10 of the 11 families. Although ancestral recombination events had eroded this founder haplotype, 10 families shared a crucial region defined by 2 particular markers. All 10 families sharing the founder haplotype were found by Hoffmann et al. (2002) to have a heterozygous deletion of 6 bp in the acceptor splice site region of intron 12 of the LBR gene. The deletion involved nucleotides -5 to -10 at the 3-prime end of intron 12. Although the mutation did not directly affect the consensus splice acceptor site, cDNA analysis showed that exon 13 was missing in the processed transcript sequence, which confirmed the functional disruption of this splice site.

Rhizomelic Skeletal Dysplasia with Pelger-Huet Anomaly

In 1 family (family P02) in the village of Gelenau studied by Hoffmann et al. (2002) in which the parents with PHA were heterozygous for the 6-bp deletion, their son (patient 8387) was presumably homozygous. This individual had neutrophils with round, nonsegmented nuclei and had presented at age 20 months with developmental delay, disproportionate body habitus, macrocephaly with prominent forehead, ventricular septal defect, and short metacarpals (SKPHA; 618019).


.0002   PELGER-HUET ANOMALY

LBR, IVS2AS, A-G, -2
ClinVar: RCV000010136

In 1 (family F10) of 11 families with Pelger-Huet anomaly (169400) residing in Gelenau, Hoffmann et al. (2002) found a splice acceptor site mutation in intron 2 of the LBR gene. The family showed a different haplotype from that of other families in the same region who shared a founder haplotype, and was found to have ancestry outside the region of Gelenau.


.0003   GREENBERG DYSPLASIA

PELGER-HUET ANOMALY, INCLUDED
LBR, 7-BP SUB, NT1599
SNP: rs387906416, ClinVar: RCV000010137, RCV000087262

Waterham et al. (2003) described a fetus, the product of a consanguineous Turkish marriage, who presented with intrauterine growth retardation at 17 weeks' gestation and was found to have severe hydrops and short-limb skeletal dysplasia consistent with thanatophoric dysplasia. Intrauterine death occurred at 18 weeks, and delivery was induced. Fetal examination showed severe hydrops, extremely shortened edematous limbs, and postaxial polydactyly on both hands. Radiographic examination showed severe platyspondyly, short irregular ribs, a 'moth-eaten' aspect of scapular and pelvic bones, and very short tubular bones with angular diaphyses. Histopathology showed almost complete absence of ossification, severe disorganization of cartilage (with nodular calcification deposits), and defective or absent joint formation. On the basis of these findings, the diagnosis of Greenberg dysplasia (215140) was made. Elevated levels of cholesta-8,14-dien-3-beta-ol in cultured skin fibroblasts were consistent with deficiency of 3-beta-hydroxysterol delta(14)-reductase. Sequence analysis of the LBR gene identified a homozygous 7-bp substitution at nucleotide 1599 in exon 13, TCTTCTA-CTAGAAG, which resulted in a truncated protein. The mother showed classic Pelger-Huet anomaly (169400), which represents the heterozygous state of 3-beta-hydroxysterol delta(14)-reductase deficiency.


.0004   PELGER-HUET ANOMALY

LBR, PRO119LEU
ClinVar: RCV000010138, RCV003415683

In a family from Slovakia, Best et al. (2003) found that Pelger-Huet anomaly (169400) was associated with a C-to-T transition in exon 3 of the LBR gene, changing codon 119 from CCG (pro) to CTG (leu) (P119L).


.0005   PELGER-HUET ANOMALY

LBR, IVS11AS, A-G, -9
ClinVar: RCV000010139

In a family from southern Italy, Best et al. (2003) identified association of Pelger-Huet anomaly (169400) with a splice acceptor site mutation in the LBR gene: IVS11-9A-G.


.0006   PELGER-HUET ANOMALY

LBR, PRO569ARG
ClinVar: RCV000010140

In an English man with Pelger-Huet anomaly (169400), Best et al. (2003) identified a heterozygous C-to-G transversion in exon 14 of the LBR gene, resulting in a pro569-to-arg (P569R) substitution.


.0007   REYNOLDS SYNDROME (1 patient)

LBR, ARG372CYS
SNP: rs200180113, gnomAD: rs200180113, ClinVar: RCV000010141, RCV001096991, RCV001349268

In a 76-year-old Caucasian woman with Reynolds syndrome (613471), Gaudy-Marqueste et al. (2010) identified a heterozygous 1114C-T transition in exon 9 of the LBR gene, resulting in an arg372-to-cys (R372C) substitution in a highly conserved residue between the fourth and fifth transmembrane domains in the C terminus. The mutation was not found in 400 control chromosomes. The patient had a long history of Raynaud phenomenon, telangiectasia, mild cholestasis associated with mitochondrial autoantibodies consistent with primary biliary cirrhosis, and limited cutaneous scleroderma. Blood smear did not show Pelger-Huet anomaly. Studies of patient lymphoblastoid cells did not show abnormalities, but patient fibroblasts showed decreased LBR and decreased levels of lamin proteins, as well as dysmorphic nuclei with mottled chromatin. These findings suggested that the R372C mutation exerted a dominant-negative effect on LBR-interacting proteins, perhaps resulting from decreased stabilization of the mutant protein and increased proteosome-mediated degradation. Gaudy-Marqueste et al. (2010) hypothesized that the mutation caused a global perturbation of the nuclear envelope protein network.


.0008   GREENBERG DYSPLASIA

LBR, ASN547ASP
SNP: rs587777171, gnomAD: rs587777171, ClinVar: RCV000087263, RCV001197988

In a fetus, the product of consanguineous Greek parents, with Greenberg dysplasia (GRBGD; 215140), Konstantinidou et al. (2008) identified a homozygous c.1639A-G transition in exon 13 of the LBR gene, resulting in an asn547-to-asp (N547D) substitution in a conserved residue in the C terminus. Each unaffected parent was heterozygous for the mutation, which was not found in 200 control Greek chromosomes.

Clayton et al. (2010) found that the consanguineous parents of a fetus with Greenberg dysplasia were heterozygous for the N547D mutation. Biologic material from the affected fetus was not available. The mutation was not found in 150 controls. The N547D substitution occurred at a highly conserved residue in the sterol reductase domain. Whereas wildtype LBR rescued a C14 sterol-reductase mutant yeast strain, N547D was only partially able to compensate. There was restoration of ergosterol, but transfected yeast also showed abnormal accumulation of 4-methylzymosterol and ignosterol.


.0009   GREENBERG DYSPLASIA

LBR, ARG583GLN
SNP: rs587777172, gnomAD: rs587777172, ClinVar: RCV000087264

In a fetus with Greenberg dysplasia (GRBGD; 215140), previously reported by Offiah et al. (2003), Clayton et al. (2010) identified compound heterozygosity for 2 mutations in the LBR gene: a c.1748G-A transition, resulting in an arg583-to-gln (R583Q) substitution at a highly conserved residue in the sterol reductase domain, and a 4-bp deletion (c.32delTGGT; 600024.0010), resulting in a frameshift and premature termination (Val11GlufsTer24). The R583Q mutation was not found in 150 controls. Analysis of parental peripheral blood cells showed that the mother, who carried the 4-bp deletion, had Pelger-Huet anomaly (169400), whereas the father, who carried the R583Q mutation, had normal neutrophils. Transfection of the R583Q mutation into a C14 sterol-reductase mutant yeast strain showed that the mutant protein was unable to compensate for the defect, and no ergosterol was produced. There was also abnormal accumulation of ignosterol.


.0010   GREENBERG DYSPLASIA

PELGER-HUET ANOMALY, INCLUDED
LBR, 4-BP DEL, 32TGGT
SNP: rs863223326, ClinVar: RCV000087265, RCV000087266

For discussion of the 4-bp deletion in the LBR gene (c.32delTGGT) that was found in compound heterozygous state in a fetus with Greenberg dysplasia (GRBGD; 215140) by Clayton et al. (2010), see 600024.0009. The mother of the fetus was heterozygous for the 4-bp deletion and had Pelger-Huet anomaly (169400).


.0011   GREENBERG DYSPLASIA

LBR, 1-BP DEL, 1402T
SNP: rs886037655, ClinVar: RCV000087267

In a fetus with Greenberg dysplasia (GRBGD; 215140), Clayton et al. (2010) identified a homozygous 1-bp deletion (c.1402delT) in the LBR gene, resulting in a frameshift and premature termination (Tyr468ThrfsTer475). The mutation was not present in 150 controls. The numbering of the mutation was discordant in the text (c.1492delT) versus the supplementary material (c.1402delT).


.0012   RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, 10-BP DEL/INS
SNP: rs1558655670, ClinVar: RCV001824058

In a 12-year-old adopted girl with mild skeletal anomalies and Pelger-Huet anomaly (SKPHA; 618019), Borovik et al. (2013) identified compound heterozygous mutations in the LBR gene: an insertion/deletion mutation (c.631_653delinsTGATGAGAAA) in exon 6, resulting in a frameshift and a premature termination codon (Ile218AspfsTer19), and a c.1757G-A transition in exon 14, resulting in an arg586-to-his (R586H; 600024.0013) at a conserved residue. The c.1757G-A variant was not found in 1,092 individuals in the 1000 Genome Project database or in 6,503 individuals in NHLBI Exome Sequencing Project database. The authors noted that the patient had dumbbell-shaped neutrophil nuclei characteristic of heterozygotes, suggesting that one of the mutations does not result in complete loss of LBR protein. No functional studies were reported.


.0013   RHIZOMELIC SKELETAL DYSPLASIA WITH OR WITHOUT PELGER-HUET ANOMALY

LBR, ARG586HIS
SNP: rs573510559, gnomAD: rs573510559, ClinVar: RCV000656653, RCV001836859, RCV002534249, RCV003163026

For discussion of the c.1757G-A transition in the LBR gene, resulting in an arg586-to-his (R586H) substitution, that was found in compound heterozygous state in a patient with mild skeletal anomalies with Pelger-Huet anomaly (SKPHA; 618019) by Borovik et al. (2013), see 600024.0012.


.0014   RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, ARG76TER
SNP: rs869312905, ClinVar: RCV000210455, RCV001250666, RCV002284376

In a 15-year-old boy with mild skeletal anomalies with Pelger-Huet anomaly (SKPHA; 618019), Sobreira et al. (2014) identified compound heterozygous mutations in the LBR gene: an arg76-to-ter (R76X) substitution in exon 3 and an asn547-to-ser (N547S; 600024.0015) substitution in exon 13. The mother and the unaffected brothers of the proband were heterozygous for the N547S mutation, and the father did not have either mutation. The mutations were found by whole-exome sequencing and confirmed by Sanger sequencing. No functional studies were reported.


.0015   RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, ASN547SER
SNP: rs374343844, gnomAD: rs374343844, ClinVar: RCV000210471, RCV001250665, RCV001330716, RCV001853373, RCV002284375, RCV003917856

For discussion of the asn547-to-ser (N547S) mutation in the LBR gene that was identified in a boy with mild skeletal anomalies with Pelger-Huet anomaly (SKPHA; 618019) by Sobreira et al. (2014), see 600024.0014.


.0016   RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, ARG502GLY
SNP: rs1131691304, gnomAD: rs1131691304, ClinVar: RCV000493673, RCV001836612

In a girl (patient 1) with short stature, spondylometaphyseal dysplasia, spontaneously improving rhizomelic limb shortening and Pelger-Huet anomaly (SKPHA; 618019), Thompson et al. (2019) identified compound heterozygous mutations in the LBR gene: a c.1504C-G transversion in exon 12 of the LBR gene, resulting in an arg502-to-gly (R502G) substitution, and a c.1748G-T transversion in exon 14, resulting in an arg583-to-leu (R583L) substitution (600024.0017). Her father was heterozygous for the mutation.


.0017   RHIZOMELIC SKELETAL DYSPLASIA WITH PELGER-HUET ANOMALY

LBR, ARG58LEU
SNP: rs587777172, gnomAD: rs587777172, ClinVar: RCV000480212, RCV001836611

For discussion of the c.1748G-T transversion in exon 14 of the LBR gene, resulting in an arg58-to-leu (R58L) substitution, that was identified in compound heterozygous state in a patient with rhizomelic skeletal dysplasia with Pelger-Huet anomaly (SKPHA; 618019) by Thompson et al. (2019), see 600024.0016.


.0018   RHIZOMELIC SKELETAL DYSPLASIA WITHOUT PELGER-HUET ANOMALY

LBR, LEU456VAL
SNP: rs377110126, gnomAD: rs377110126, ClinVar: RCV000489302, RCV000763831, RCV001824057, RCV002279263

In 2 middle-aged sisters with short stature with predominant rhizomelia of the upper limbs and mesomelia of the lower limbs without Pelger-Huet anomaly (SKPHA; 618019), Collins et al. (2020) identified a homozygous c.1366C-G transversion (c.1366C-G, NM_002296.4) in exon 11 of the LBR gene, resulting in a leu456-to-val (L456V) substitution.


.0019   GREENBERG DYSPLASIA

LBR, c.366+1G-T
SNP: rs2150958142, ClinVar: RCV001824087

In a patient, born to consanguineous Turkish parents, with Greenberg dysplasia (GRBGD; 215140), who had a presumed diagnosis of achondrogenesis 1A, Wehrle et al. (2018) detected a homozygous c.366+1G-T transversion that abolishes the splice donor site of exon 3. The nucleotide change was validated by Sanger sequencing. The parents were heterozygous for the mutation. Molecular characterization of patient-derived fibroblasts demonstrated missplicing of exon 3, resulting in a frameshift and premature termination (Glu111SerfsTer39). LBR mRNA was barely detectable by real-time PCR, compatible with nonsense-mediated decay. Western blot analysis and immunofluorescence demonstrated that the fetal cells were completely devoid of LBR protein.


.0020   GREENBERG DYSPLASIA

LBR, ASP460ARG
SNP: rs2150945343, ClinVar: RCV001824088

In 2 sib fetuses with Greenberg dysplasia (GRBGD; 215140), Giorgio et al. (2019) identified a homozygous c.1379A-G transition in the LBR gene, resulting in an asp460-to-arg (D460R) substitution. The mutation, which was identified by whole-exome sequencing and confirmed by Sanger sequencing, was present in heterozygous state in the parents.


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Contributors:
Kelly A. Przylepa - updated : 02/03/2022
Carol A. Bocchini - updated : 06/21/2018
Cassandra L. Kniffin - updated : 2/26/2014
Patricia A. Hartz - updated : 1/8/2014
Patricia A. Hartz - updated : 11/23/2011
Marla J. F. O'Neill - updated : 1/20/2011
Cassandra L. Kniffin - updated : 7/7/2010
George E. Tiller - updated : 10/26/2004
Victor A. McKusick - updated : 1/23/2004
Victor A. McKusick - updated : 4/11/2003
Victor A. McKusick - updated : 8/29/2002
Victor A. McKusick - updated : 7/16/2002
Alan F. Scott- updated : 4/22/1996

Creation Date:
Victor A. McKusick : 7/12/1994

Edit History:
joanna : 03/17/2022
carol : 02/04/2022
carol : 02/03/2022
alopez : 12/01/2020
carol : 06/25/2019
alopez : 06/24/2019
carol : 06/21/2018
alopez : 09/23/2016
carol : 09/16/2015
mcolton : 8/18/2015
carol : 2/27/2014
mcolton : 2/27/2014
ckniffin : 2/26/2014
carol : 2/25/2014
mgross : 1/8/2014
mcolton : 12/18/2013
alopez : 10/3/2012
mgross : 12/9/2011
terry : 11/23/2011
wwang : 2/2/2011
terry : 1/20/2011
wwang : 7/12/2010
ckniffin : 7/7/2010
terry : 12/17/2009
tkritzer : 10/26/2004
carol : 4/7/2004
tkritzer : 1/29/2004
terry : 1/23/2004
tkritzer : 4/23/2003
tkritzer : 4/21/2003
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terry : 4/11/2003
tkritzer : 11/19/2002
alopez : 9/4/2002
terry : 8/29/2002
alopez : 8/1/2002
alopez : 7/22/2002
cwells : 7/16/2002
cwells : 7/16/2002
terry : 4/22/1996
mark : 4/22/1996
mark : 5/9/1995
mimadm : 7/30/1994
jason : 7/12/1994