Entry - *600675 - X-RAY REPAIR CROSS COMPLEMENTING 3; XRCC3 - OMIM
 
* 600675

X-RAY REPAIR CROSS COMPLEMENTING 3; XRCC3


Alternative titles; symbols

X-RAY REPAIR, COMPLEMENTING DEFECTIVE, IN CHINESE HAMSTER, 3


HGNC Approved Gene Symbol: XRCC3

Cytogenetic location: 14q32.33     Genomic coordinates (GRCh38): 14:103,697,617-103,715,451 (from NCBI)


Gene-Phenotype Relationships
Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
14q32.33 {Breast cancer, susceptibility to} 114480 AD, SMu 3
{Melanoma, cutaneous malignant, 6} 613972 3

TEXT

Cloning and Expression

The mutagen-sensitive CHO line irs1SF was first isolated on the basis of hypersensitivity to ionizing radiation and was found to be chromosomally unstable as well as cross-sensitive to diverse DNA-damaging agents: ultraviolet (UV) radiation, ethyl methanesulfonate, camptothecin, and the cross-linking agents mitomycin C, cisplatin, nitrogen mustard, and melphalan. Tebbs et al. (1995) cloned a human cDNA sequence that corrected x-ray and cross-linking sensitivities, as well as spontaneous chromosomal aberrations, of irs1SF.


Gene Function

Liu et al. (1998) showed that XRCC3 interacts directly with RAD51 (179617) and may cooperate with RAD51 during recombinational repair.

Masson et al. (2001) found that antibody directed against RAD51C (602774) coimmunoprecipitated XRCC2 in an endogenous complex with RAD51C in HeLa cell lysates. Gel filtration of the complex suggested that a heterodimer is formed between the proteins. Using coprecipitation and multiple pull-down assays, Liu et al. (2002) confirmed interaction between these proteins. They also found that RAD51 coprecipitates with XRCC3, suggesting that RAD51 can be present in a trimeric complex of XRCC3, RAD51C, and RAD51.

Brenneman et al. (2002) found that XRCC3 mutant cells displayed radically altered homologous recombination (HR) product spectra, with increased gene conversion tract lengths, increased frequencies of discontinuous tracts, and frequent local rearrangements associated with HR. These results indicated that XRCC3 function is not limited to HR initiation, but extends to later stages in formation and resolution of HR intermediates, possibly by stabilizing heteroduplex DNA. The results further demonstrated that HR defects can promote genomic instability not only through failure to initiate HR (leading to nonhomologous repair), but also through aberrant processing of HR intermediates. The authors suggested that both mechanisms may contribute to carcinogenesis in HR-deficient cells.

Wilson et al. (2008) found that XRCC3, BRCA2 (600185), FANCD2 (227646), and FANCG (602956) formed a complex via multiple pairwise interactions following phosphorylation of FANCG. They proposed that a complex made up of at least these 4 proteins promotes homologous recombination repair of damaged DNA.

Using Western blot analysis, Sage et al. (2010) found that mitochondrial levels of RAD51, RAD51C, and XRCC3 in human cell lines increased in response to oxidative stress and weak ionizing radiation. Immunoprecipitation analysis showed that oxidative stress increased the interaction of RAD51 with mitochondrial DNA (mtDNA). Oxidative stress normally increases mtDNA copy number; however, knockdown of RAD51, RAD51C, or XRCC3 suppressed this stress response and resulted in decreased mtDNA copy number. Sage et al. (2010) concluded that proteins of the homologous recombination pathway are required to maintain the mitochondrial genome.


Mapping

Tebbs et al. (1995) mapped the XRCC3 gene to human chromosome 14q32.3 by fluorescence in situ hybridization and Southern blot hybridization with genomic DNA from 2 independent hybrid clone panels.


Molecular Genetics

Exposure to UV radiation is a major risk factor for the development of malignant melanoma. DNA damage caused by UV radiation is thought to play a major role in carcinogenesis. In an investigation of the association between polymorphisms in DNA repair genes and the development of malignant melanoma, Winsey et al. (2000) studied 125 individuals with malignant melanoma lesions or staging suggesting a high risk of relapse or metastatic disease. They found that the presence of a T allele at position 18067 in exon 7 of the XRCC3 gene was significantly associated with melanoma (CMM6; 613972) development (p = 0.004; odds ratio, 2.36; relative risk, 1.74).

Kuschel et al. (2002) performed genetic association studies in a population-based breast cancer case-control study analyzing polymorphisms in 7 genes involved in DNA repair. For XRCC3, there was evidence for 4 common haplotypes and 4 rarer ones that appear to have arisen by recombination. Genotype frequencies differed between cases and controls for 2 polymorphisms in XRCC3: T241M (600675.0001; P = 0.015) and IVS5 A-G at nucleotide 17893 (600675.0002; P = 0.008). Homozygous carriers of M241 were associated with an increased risk for breast cancer. Two haplotypes, AGC and GGC, were associated with nonsignificant reductions in breast cancer risk, and the rare GAT haplotype was associated with a significantly increased risk. The authors hypothesized that variability in DNA repair efficiency may alter breast cancer risk.


Animal Model

In a study of 1,751 knockout alleles created by the International Mouse Phenotyping Consortium (IMPC), Dickinson et al. (2016) found that knockout of the mouse homolog of human XRCC3 is homozygous-lethal (defined as absence of homozygous mice after screening of at least 28 pups before weaning).


ALLELIC VARIANTS ( 2 Selected Examples):

.0001 MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 6

XRCC3, THR241MET
  
RCV000009500...

Winsey et al. (2000) found an association between a T allele at nucleotide 18067 in exon 7 of the XRCC3 gene and susceptibility to cutaneous malignant melanoma (613972). The 18067C-T transition was predicted to cause a thr-to-met substitution in the XRCC3 protein.


.0002 BREAST CANCER, SUSCEPTIBILITY TO

XRCC3, IVS5, A-G, -14
  
RCV000009501

Kuschel et al. (2002) performed genetic association studies in a population-based breast cancer (see 114480) case-control study analyzing polymorphisms in 7 genes involved in DNA repair. Genotype frequencies differed between cases and controls for 2 polymorphisms in the XRCC3 gene: T241M (600675.0001; P = 0.015) and IVS5 A-G at nucleotide 17893 (p = 0.008).


REFERENCES

  1. Brenneman, M. A., Wagener, B. M., Miller, C. A., Allen, C., Nickoloff, J. A. XRCC3 controls the fidelity of homologous recombination: roles for XRCC3 in late stages of recombination. Molec. Cell 10: 387-395, 2002. [PubMed: 12191483, related citations] [Full Text]

  2. Dickinson, M. E., Flenniken, A. M., Ji, X., Teboul, L., Wong, M. D., White, J. K., Meehan, T. F., Weninger, W. J., Westerberg, H., Adissu, H., Baker, C. N., Bower, L., and 73 others. High-throughput discovery of novel developmental phenotypes. Nature 537: 508-514, 2016. Note: Erratum: Nature 551: 398 only, 2017. [PubMed: 27626380, related citations] [Full Text]

  3. Kuschel, B., Auranen, A., McBride, S., Novik, K. L., Antoniou, A., Lipscombe, J. M., Day, N. E., Easton, D. F., Ponder, B. A. J., Pharoah, P. D. P., Dunning, A. Variants in DNA double-strand break repair genes and breast cancer susceptibility. Hum. Molec. Genet. 11: 1399-1407, 2002. [PubMed: 12023982, related citations] [Full Text]

  4. Liu, N., Lamerdin, J. E., Tebbs, R. S., Schild, D., Tucker, J. D., Shen, M. R., Brookman, K. W., Siciliano, M. J., Walter, C. A., Fan, W., Narayana, L. S., Zhou, Z.-Q., Adamson, A. W., Sorensen, K. J., Chen, D. J., Jones, N. J., Thompson, L. H. XRCC2 and XRCC3, new human Rad51-family members, promote chromosome stability and protect against DNA cross-links and other damages. Molec. Cell 1: 783-793, 1998. [PubMed: 9660962, related citations] [Full Text]

  5. Liu, N., Schild, D., Thelen, M. P., Thompson, L. H. Involvement of Rad51C in two distinct protein complexes of Rad51 paralogs in human cells. Nucleic Acids Res. 30: 1009-1015, 2002. [PubMed: 11842113, images, related citations] [Full Text]

  6. Masson, J.-Y., Tarsounas, M. C., Stasiak, A. Z., Stasiak, A., Shah, R., McIlwraith, M. J., Benson, F. E., West, S. C. Identification and purification of two distinct complexes containing the five RAD51 paralogs. Genes Dev. 15: 3296-3307, 2001. [PubMed: 11751635, images, related citations] [Full Text]

  7. Sage, J. M., Gildemeister, O. S., Knight, K. L. Discovery of a novel function for human Rad51: maintenance of the mitochondrial genome. J. Biol. Chem. 285: 18984-18990, 2010. [PubMed: 20413593, images, related citations] [Full Text]

  8. Tebbs, R. S., Zhao, Y., Tucker, J. D., Scheerer, J. B., Siciliano, M. J., Hwang, M., Liu, N., Legerski, R. J., Thompson, L. H. Correction of chromosomal instability and sensitivity to diverse mutagens by a cloned cDNA of the XRCC3 DNA repair gene. Proc. Nat. Acad. Sci. 92: 6354-6358, 1995. [PubMed: 7603995, related citations] [Full Text]

  9. Wilson, J. B., Yamamoto, K., Marriott, A. S., Hussain, S., Sung, P., Hoatlin, M. E., Mathew, C. G., Takata, M., Thompson, L. H., Kupfer, G. M., Jones, N. J. FANCG promotes formation of a newly identified protein complex containing BRCA2, FANCD2 and XRCC3. Oncogene 27: 3641-3652, 2008. [PubMed: 18212739, related citations] [Full Text]

  10. Winsey, S. L., Haldar, N. A., Marsh, H. P., Bunce, M., Marshall, S. E., Harris, A. L., Wojnarowska, F., Welsh, K. I. A variant within the DNA repair gene XRCC3 is associated with the development of melanoma skin cancer. Cancer Res. 60: 5612-5616, 2000. [PubMed: 11059748, related citations]


Ada Hamosh - updated : 02/21/2017
Patricia A. Hartz - updated : 8/12/2010
Patricia A. Hartz - updated : 7/15/2009
George E. Tiller - updated : 2/25/2003
Stylianos E. Antonarakis - updated : 9/11/2002
Patricia A. Hartz - updated : 8/21/2002
Victor A. McKusick - updated : 2/26/2001
Stylianos E. Antonarakis - updated : 1/21/1999
Creation Date:
Victor A. McKusick : 7/24/1995
carol : 03/05/2021
carol : 01/31/2018
alopez : 02/21/2017
carol : 05/12/2011
wwang : 9/21/2010
terry : 8/12/2010
joanna : 7/27/2010
mgross : 7/15/2009
alopez : 9/3/2008
cwells : 2/25/2003
mgross : 9/11/2002
mgross : 8/21/2002
cwells : 3/2/2001
terry : 2/26/2001
carol : 1/21/1999
mark : 7/24/1995

* 600675

X-RAY REPAIR CROSS COMPLEMENTING 3; XRCC3


Alternative titles; symbols

X-RAY REPAIR, COMPLEMENTING DEFECTIVE, IN CHINESE HAMSTER, 3


HGNC Approved Gene Symbol: XRCC3

Cytogenetic location: 14q32.33     Genomic coordinates (GRCh38): 14:103,697,617-103,715,451 (from NCBI)


Gene-Phenotype Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
14q32.33 {Breast cancer, susceptibility to} 114480 Autosomal dominant; Somatic mutation 3
{Melanoma, cutaneous malignant, 6} 613972 3

TEXT

Cloning and Expression

The mutagen-sensitive CHO line irs1SF was first isolated on the basis of hypersensitivity to ionizing radiation and was found to be chromosomally unstable as well as cross-sensitive to diverse DNA-damaging agents: ultraviolet (UV) radiation, ethyl methanesulfonate, camptothecin, and the cross-linking agents mitomycin C, cisplatin, nitrogen mustard, and melphalan. Tebbs et al. (1995) cloned a human cDNA sequence that corrected x-ray and cross-linking sensitivities, as well as spontaneous chromosomal aberrations, of irs1SF.


Gene Function

Liu et al. (1998) showed that XRCC3 interacts directly with RAD51 (179617) and may cooperate with RAD51 during recombinational repair.

Masson et al. (2001) found that antibody directed against RAD51C (602774) coimmunoprecipitated XRCC2 in an endogenous complex with RAD51C in HeLa cell lysates. Gel filtration of the complex suggested that a heterodimer is formed between the proteins. Using coprecipitation and multiple pull-down assays, Liu et al. (2002) confirmed interaction between these proteins. They also found that RAD51 coprecipitates with XRCC3, suggesting that RAD51 can be present in a trimeric complex of XRCC3, RAD51C, and RAD51.

Brenneman et al. (2002) found that XRCC3 mutant cells displayed radically altered homologous recombination (HR) product spectra, with increased gene conversion tract lengths, increased frequencies of discontinuous tracts, and frequent local rearrangements associated with HR. These results indicated that XRCC3 function is not limited to HR initiation, but extends to later stages in formation and resolution of HR intermediates, possibly by stabilizing heteroduplex DNA. The results further demonstrated that HR defects can promote genomic instability not only through failure to initiate HR (leading to nonhomologous repair), but also through aberrant processing of HR intermediates. The authors suggested that both mechanisms may contribute to carcinogenesis in HR-deficient cells.

Wilson et al. (2008) found that XRCC3, BRCA2 (600185), FANCD2 (227646), and FANCG (602956) formed a complex via multiple pairwise interactions following phosphorylation of FANCG. They proposed that a complex made up of at least these 4 proteins promotes homologous recombination repair of damaged DNA.

Using Western blot analysis, Sage et al. (2010) found that mitochondrial levels of RAD51, RAD51C, and XRCC3 in human cell lines increased in response to oxidative stress and weak ionizing radiation. Immunoprecipitation analysis showed that oxidative stress increased the interaction of RAD51 with mitochondrial DNA (mtDNA). Oxidative stress normally increases mtDNA copy number; however, knockdown of RAD51, RAD51C, or XRCC3 suppressed this stress response and resulted in decreased mtDNA copy number. Sage et al. (2010) concluded that proteins of the homologous recombination pathway are required to maintain the mitochondrial genome.


Mapping

Tebbs et al. (1995) mapped the XRCC3 gene to human chromosome 14q32.3 by fluorescence in situ hybridization and Southern blot hybridization with genomic DNA from 2 independent hybrid clone panels.


Molecular Genetics

Exposure to UV radiation is a major risk factor for the development of malignant melanoma. DNA damage caused by UV radiation is thought to play a major role in carcinogenesis. In an investigation of the association between polymorphisms in DNA repair genes and the development of malignant melanoma, Winsey et al. (2000) studied 125 individuals with malignant melanoma lesions or staging suggesting a high risk of relapse or metastatic disease. They found that the presence of a T allele at position 18067 in exon 7 of the XRCC3 gene was significantly associated with melanoma (CMM6; 613972) development (p = 0.004; odds ratio, 2.36; relative risk, 1.74).

Kuschel et al. (2002) performed genetic association studies in a population-based breast cancer case-control study analyzing polymorphisms in 7 genes involved in DNA repair. For XRCC3, there was evidence for 4 common haplotypes and 4 rarer ones that appear to have arisen by recombination. Genotype frequencies differed between cases and controls for 2 polymorphisms in XRCC3: T241M (600675.0001; P = 0.015) and IVS5 A-G at nucleotide 17893 (600675.0002; P = 0.008). Homozygous carriers of M241 were associated with an increased risk for breast cancer. Two haplotypes, AGC and GGC, were associated with nonsignificant reductions in breast cancer risk, and the rare GAT haplotype was associated with a significantly increased risk. The authors hypothesized that variability in DNA repair efficiency may alter breast cancer risk.


Animal Model

In a study of 1,751 knockout alleles created by the International Mouse Phenotyping Consortium (IMPC), Dickinson et al. (2016) found that knockout of the mouse homolog of human XRCC3 is homozygous-lethal (defined as absence of homozygous mice after screening of at least 28 pups before weaning).


ALLELIC VARIANTS 2 Selected Examples):

.0001   MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 6

XRCC3, THR241MET
SNP: rs861539, gnomAD: rs861539, ClinVar: RCV000009500, RCV003546454, RCV003974815

Winsey et al. (2000) found an association between a T allele at nucleotide 18067 in exon 7 of the XRCC3 gene and susceptibility to cutaneous malignant melanoma (613972). The 18067C-T transition was predicted to cause a thr-to-met substitution in the XRCC3 protein.


.0002   BREAST CANCER, SUSCEPTIBILITY TO

XRCC3, IVS5, A-G, -14
SNP: rs1799796, gnomAD: rs1799796, ClinVar: RCV000009501

Kuschel et al. (2002) performed genetic association studies in a population-based breast cancer (see 114480) case-control study analyzing polymorphisms in 7 genes involved in DNA repair. Genotype frequencies differed between cases and controls for 2 polymorphisms in the XRCC3 gene: T241M (600675.0001; P = 0.015) and IVS5 A-G at nucleotide 17893 (p = 0.008).


REFERENCES

  1. Brenneman, M. A., Wagener, B. M., Miller, C. A., Allen, C., Nickoloff, J. A. XRCC3 controls the fidelity of homologous recombination: roles for XRCC3 in late stages of recombination. Molec. Cell 10: 387-395, 2002. [PubMed: 12191483] [Full Text: https://doi.org/10.1016/s1097-2765(02)00595-6]

  2. Dickinson, M. E., Flenniken, A. M., Ji, X., Teboul, L., Wong, M. D., White, J. K., Meehan, T. F., Weninger, W. J., Westerberg, H., Adissu, H., Baker, C. N., Bower, L., and 73 others. High-throughput discovery of novel developmental phenotypes. Nature 537: 508-514, 2016. Note: Erratum: Nature 551: 398 only, 2017. [PubMed: 27626380] [Full Text: https://doi.org/10.1038/nature19356]

  3. Kuschel, B., Auranen, A., McBride, S., Novik, K. L., Antoniou, A., Lipscombe, J. M., Day, N. E., Easton, D. F., Ponder, B. A. J., Pharoah, P. D. P., Dunning, A. Variants in DNA double-strand break repair genes and breast cancer susceptibility. Hum. Molec. Genet. 11: 1399-1407, 2002. [PubMed: 12023982] [Full Text: https://doi.org/10.1093/hmg/11.12.1399]

  4. Liu, N., Lamerdin, J. E., Tebbs, R. S., Schild, D., Tucker, J. D., Shen, M. R., Brookman, K. W., Siciliano, M. J., Walter, C. A., Fan, W., Narayana, L. S., Zhou, Z.-Q., Adamson, A. W., Sorensen, K. J., Chen, D. J., Jones, N. J., Thompson, L. H. XRCC2 and XRCC3, new human Rad51-family members, promote chromosome stability and protect against DNA cross-links and other damages. Molec. Cell 1: 783-793, 1998. [PubMed: 9660962] [Full Text: https://doi.org/10.1016/s1097-2765(00)80078-7]

  5. Liu, N., Schild, D., Thelen, M. P., Thompson, L. H. Involvement of Rad51C in two distinct protein complexes of Rad51 paralogs in human cells. Nucleic Acids Res. 30: 1009-1015, 2002. [PubMed: 11842113] [Full Text: https://doi.org/10.1093/nar/30.4.1009]

  6. Masson, J.-Y., Tarsounas, M. C., Stasiak, A. Z., Stasiak, A., Shah, R., McIlwraith, M. J., Benson, F. E., West, S. C. Identification and purification of two distinct complexes containing the five RAD51 paralogs. Genes Dev. 15: 3296-3307, 2001. [PubMed: 11751635] [Full Text: https://doi.org/10.1101/gad.947001]

  7. Sage, J. M., Gildemeister, O. S., Knight, K. L. Discovery of a novel function for human Rad51: maintenance of the mitochondrial genome. J. Biol. Chem. 285: 18984-18990, 2010. [PubMed: 20413593] [Full Text: https://doi.org/10.1074/jbc.M109.099846]

  8. Tebbs, R. S., Zhao, Y., Tucker, J. D., Scheerer, J. B., Siciliano, M. J., Hwang, M., Liu, N., Legerski, R. J., Thompson, L. H. Correction of chromosomal instability and sensitivity to diverse mutagens by a cloned cDNA of the XRCC3 DNA repair gene. Proc. Nat. Acad. Sci. 92: 6354-6358, 1995. [PubMed: 7603995] [Full Text: https://doi.org/10.1073/pnas.92.14.6354]

  9. Wilson, J. B., Yamamoto, K., Marriott, A. S., Hussain, S., Sung, P., Hoatlin, M. E., Mathew, C. G., Takata, M., Thompson, L. H., Kupfer, G. M., Jones, N. J. FANCG promotes formation of a newly identified protein complex containing BRCA2, FANCD2 and XRCC3. Oncogene 27: 3641-3652, 2008. [PubMed: 18212739] [Full Text: https://doi.org/10.1038/sj.onc.1211034]

  10. Winsey, S. L., Haldar, N. A., Marsh, H. P., Bunce, M., Marshall, S. E., Harris, A. L., Wojnarowska, F., Welsh, K. I. A variant within the DNA repair gene XRCC3 is associated with the development of melanoma skin cancer. Cancer Res. 60: 5612-5616, 2000. [PubMed: 11059748]


Contributors:
Ada Hamosh - updated : 02/21/2017
Patricia A. Hartz - updated : 8/12/2010
Patricia A. Hartz - updated : 7/15/2009
George E. Tiller - updated : 2/25/2003
Stylianos E. Antonarakis - updated : 9/11/2002
Patricia A. Hartz - updated : 8/21/2002
Victor A. McKusick - updated : 2/26/2001
Stylianos E. Antonarakis - updated : 1/21/1999

Creation Date:
Victor A. McKusick : 7/24/1995

Edit History:
carol : 03/05/2021
carol : 01/31/2018
alopez : 02/21/2017
carol : 05/12/2011
wwang : 9/21/2010
terry : 8/12/2010
joanna : 7/27/2010
mgross : 7/15/2009
alopez : 9/3/2008
cwells : 2/25/2003
mgross : 9/11/2002
mgross : 8/21/2002
cwells : 3/2/2001
terry : 2/26/2001
carol : 1/21/1999
mark : 7/24/1995