Entry - #601412 - DEAFNESS, AUTOSOMAL DOMINANT 7; DFNA7 - OMIM
# 601412

DEAFNESS, AUTOSOMAL DOMINANT 7; DFNA7


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
1q23.3 Deafness, autosomal dominant 7 601412 AD 3 LMX1A 600298
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- Autosomal dominant
HEAD & NECK
Ears
- Hearing loss, sensorineural, mild to profound
- Downward sloping audiogram
- Vertigo (in some patients)
- Tinnitus (in some patients)
MISCELLANEOUS
- Highly variable age at onset and severity
- Age at onset ranges from congenital to mid-adulthood
- Progressive disorder
- Two unrelated Dutch families with confirmed mutations have been reported (last curated February 2020)
MOLECULAR BASIS
- Caused by mutation in the LIM homeobox transcription factor 1, alpha gene (LMX1A, 600298.0001)
Deafness, autosomal dominant - PS124900 - 76 Entries
Location Phenotype Inheritance Phenotype
mapping key
Phenotype
MIM number
Gene/Locus Gene/Locus
MIM number
1p36.12 Deafness, autosomal dominant 85 AD 3 620227 USP48 617445
1p34.3 Deafness, autosomal dominant 2B AD 3 612644 GJB3 603324
1p34.3 ?Deafness, autosomal dominant 88 AD 3 620283 EPHA10 611123
1p34.2 Deafness, autosomal dominant 2A AD 3 600101 KCNQ4 603537
1p21.1 Deafness, autosomal dominant 37 AD 3 618533 COL11A1 120280
1q21-q23 Deafness, autosomal dominant 49 AD 2 608372 DFNA49 608372
1q21.3 Deafness, autosomal dominant 87 AD 3 620281 PI4KB 602758
1q23.3 Deafness, autosomal dominant 7 AD 3 601412 LMX1A 600298
1q44 Deafness, autosomal dominant 34, with or without inflammation AD 3 617772 NLRP3 606416
2p21-p12 Deafness, autosomal dominant 58 AD 4 615654 DFNA58 615654
2p12 Deafness, autosomal dominant 43 AD 2 608394 DFNA43 608394
2p11.2 ?Deafness, autosomal dominant 81 AD 3 619500 ELMOD3 615427
2q23-q24.3 Deafness, autosomal dominant 16 AD 2 603964 DFNA16 603964
3p25.3 Deafness, autosomal dominant 82 AD 3 619804 ATP2B2 108733
3q21.3 ?Deafness, autosomal dominant 70 AD 3 616968 MCM2 116945
3q22 Deafness, autosomal dominant 18 AD 2 606012 DFNA18 606012
3q23 Deafness, autosomal dominant 76 AD 3 618787 PLS1 602734
3q28 ?Deafness, autosomal dominant 44 AD 3 607453 CCDC50 611051
4p16.1 Deafness, autosomal dominant 6/14/38 AD 3 600965 WFS1 606201
4q12 Deafness, autosomal dominant 27 AD 3 612431 REST 600571
4q21.22 ?Deafness, autosomal dominant 79 AD 3 619086 SCD5 608370
4q22.2 ?Deafness, autosomal dominant 89 AD 3 620284 ATOH1 601461
4q35-qter Deafness, autosomal dominant 24 AD 2 606282 DFNA24 606282
5q13.2 ?Deafness, autosomal dominant 83 AD 3 619808 MAP1B 157129
5q23.3 Deafness, autosomal dominant 78 AD 3 619081 SLC12A2 600840
5q31.1-q32 Deafness, autosomal dominant 52 AD 2 607683 DFNA52 607683
5q31 Deafness, autosomal dominant 54 AD 2 615649 DFNA54 615649
5q31.3 Deafness, autosomal dominant 1, with or without thrombocytopenia AD 3 124900 DIAPH1 602121
5q32 Deafness, autosomal dominant 15 AD 3 602459 POU4F3 602460
6p22.3 Deafness, autosomal dominant 21 AD 3 607017 RIPOR2 611410
6p21.3 Deafness, autosomal dominant 31 AD 2 608645 DFNA31 608645
6p21.33 ?Deafness, autosomal dominant 72 AD 3 617606 SLC44A4 606107
6p21.32 Deafness, autosomal dominant 13 AD 3 601868 COL11A2 120290
6q14.1 Deafness, autosomal dominant 22 AD 3 606346 MYO6 600970
6q14.1 Deafness, autosomal dominant 22, with hypertrophic cardiomyopathy AD 3 606346 MYO6 600970
6q21 ?Deafness, autosomal dominant 66 AD 3 616969 CD164 603356
6q23.2 Deafness, autosomal dominant 10 AD 3 601316 EYA4 603550
7p15.3 Deafness, autosomal dominant 5 AD 3 600994 GSDME 608798
7p14.3 ?Deafness, autosomal dominant 74 AD 3 618140 PDE1C 602987
7q22.1 ?Deafness, autosomal dominant 75 AD 3 618778 TRRAP 603015
7q32.2 Deafness, autosomal dominant 50 AD 3 613074 MIR96 611606
8q22.3 Deafness, autosomal dominant 28 AD 3 608641 GRHL2 608576
9p22-p21 Deafness, autosomal dominant 47 AD 2 608652 DFNA47 608652
9q21.11 Deafness, autosomal dominant 51 AD 4 613558 DFNA51 613558
9q21.13 Deafness, autosomal dominant 36 AD 3 606705 TMC1 606706
9q33.1 Deafness, autosomal dominant 56 AD 3 615629 TNC 187380
10p12.1 Deafness, autosomal dominant 90 AD 3 620722 MYO3A 606808
11p14.2-q12.3 Deafness, autosomal dominant 59 AD 2 612642 DFNA59 612642
11q13.5 Deafness, autosomal dominant 11 AD 3 601317 MYO7A 276903
11q23.3 Deafness, autosomal dominant 8/12 AD 3 601543 TECTA 602574
12q13-q14 Deafness, autosomal dominant 48 AD 2 607841 DFNA48 607841
12q21.31 Deafness, autosomal dominant 73 AD 3 617663 PTPRQ 603317
12q21.32 Deafness, autosomal dominant 69, unilateral or asymmetric AD 3 616697 KITLG 184745
12q23.1 Deafness, autosomal dominant 25 AD 3 605583 SLC17A8 607557
12q24.31 Deafness, autosomal dominant 64 AD 3 614152 DIABLO 605219
12q24.33 Deafness, autosomal dominant 41 AD 3 608224 P2RX2 600844
13q12.11 Deafness, autosomal dominant 3A AD 3 601544 GJB2 121011
13q12.11 Deafness, autosomal dominant 3B AD 3 612643 GJB6 604418
13q34 Deafness, autosomal dominant 33 AD 2 614211 DFNA33 614211
13q34 Deafness, autosomal dominant 84 AD 3 619810 ATP11A 605868
14q11.2-q12 Deafness, autosomal dominant 53 AD 2 609965 DFNA53 609965
14q12 Deafness, autosomal dominant 9 AD 3 601369 COCH 603196
14q23.1 Deafness, autosomal dominant 23 AD 3 605192 SIX1 601205
15q21.2 ?Deafness, autosomal dominant 71 AD 3 617605 DMXL2 612186
15q25-q26 Deafness, autosomal dominant 30 AD 2 606451 DFNA30 606451
15q25.2 ?Deafness, autosomal dominant 68 AD 3 616707 HOMER2 604799
16p13.3 Deafness, autosomal dominant 65 AD 3 616044 TBC1D24 613577
16p13.11 ?Deafness, autosomal dominant 77 AD 3 618915 ABCC1 158343
16p12.2 Deafness, autosomal dominant 40 AD 3 616357 CRYM 123740
17q25.3 Deafness, autosomal dominant 20/26 AD 3 604717 ACTG1 102560
18p11.32 ?Deafness, autosomal dominant 86 AD 3 620280 THOC1 606930
18q11.1-q11.2 Deafness, autosomal dominant 80 AD 3 619274 GREB1L 617782
19q13.31-q13.32 Deafness, autosomal dominant 4B AD 3 614614 CEACAM16 614591
19q13.33 Deafness, autosomal dominant 4A AD 3 600652 MYH14 608568
20q13.33 Deafness, autosomal dominant 67 AD 3 616340 OSBPL2 606731
22q12.3 Deafness, autosomal dominant 17 AD 3 603622 MYH9 160775

TEXT

A number sign (#) is used with this entry because of evidence that autosomal dominant deafness-7 (DFNA7) is caused by heterozygous mutation in the LMX1A gene (600298) on chromosome 1q22.


Description

Autosomal dominant deafness-7 (DFNA7) is a form of progressive sensorineural hearing loss with highly variable age at onset and severity, even within families. The age at onset ranges from congenital to mid-adulthood. Some patients may have associated vertigo (summary by Wesdorp et al., 2018).


Clinical Features

Fagerheim et al. (1996) described a large Norwegian family with autosomal dominant nonsyndromic progressive high-tone hearing loss. In the majority of affected family members examined with successive audiograms, the hearing loss was greater than 45 dB by age 15 years. Linkage analysis was performed in this family (see MAPPING), but additional genetic and DNA studies were not performed.

Wesdorp et al. (2018) reported 2 large unrelated families of Dutch origin in which 7 individuals had autosomal dominant nonsyndromic sensorineural hearing loss. The age at onset and the phenotype were highly variable, even within families. Two unrelated patients had onset at birth, 1 had childhood onset, 1 had onset at puberty, and 3 had onset between 26 and 35 years of age. The hearing loss, which was progressive for most patients, was mild to profound and associated with a downward sloping audiogram. Four patients had vestibular involvement with evidence of hyporeflexia manifest as vertigo and tinnitus; oculomotor testing was normal.


Inheritance

The transmission pattern of DFNA7 in the families reported by Wesdorp et al. (2018) was consistent with autosomal dominant inheritance.


Mapping

In a large Norwegian family with autosomal dominant nonsyndromic progressive high-tone hearing loss, Fagerheim et al. (1996) found linkage of the disorder to chromosome 1q21-q23. A maximum lod score of 7.65 at theta = 0 was obtained with the microsatellite marker D1S196. Fagerheim et al. (1996) reported that there are several candidate genes located in 1q21-q23, including LMX1A and POU2F1 (164175). They noted that the POU3F4 gene (300039) is involved in X-linked deafness (304400) and that the POU2F1 gene is located on chromosome 1 only 0.8-cM from the D1S196 marker which gave the highest lod score with DFNA7. They noted further that the POU genes encode a family of DNA-binding transcription factors with 3 domains in common. The POU2F1 gene was reported to be expressed in the cochlea during rat embryogenesis, consistent with its contribution to inner ear development.


Molecular Genetics

In affected members of 2 unrelated Dutch families with DFNA7, Wesdorp et al. (2018) identified heterozygous missense mutations at highly conserved residues in the LMX1A gene (V241L, 600298.0001 and C97S, 600298.0002). Functional studies of the variant and studies of patient cells were not performed, and the authors postulated haploinsufficiency as a pathogenetic mechanism. However, Wesdorp et al. (2018) noted that Lmx1a heterozygous mutant mice have normal hearing (see ANIMAL MODEL and Steffes et al., 2012), which is not supportive of haploinsufficiency as the disease mechanism.


Animal Model

Bergstrom et al. (1999) characterized the phenotype of the recessive 'dreher' (dr) mutant mouse, which was later demonstrated to be caused by mutation in the Lmx1a gene (Millonig et al., 2000). Mice homozygous for the dr allele have ataxic gait, circling behavior, impaired righting reflex, hyperactivity, inner ear defects, deafness, and pigmentation abnormalities. Other features include cerebellar hypoplasia, cerebellar foliation and lamination abnormalities, neocortical disruptions of neuronal migration, underdeveloped Mullerian duct derivatives, and skeletal and skull defects. Bergstrom et al. (1999) mapped the dr locus to chromosome 1 in a region that shows syntenic homology with human chromosome 1q21-q23.

In the vertebrate central nervous system, a cascade of signals that originates in the ectoderm adjacent to the neural tube is propagated by the roof plate to dorsalize the neural tube. Millonig et al. (2000) reported that the phenotype of a spontaneous neurologic mutant mouse, called 'dreher' (dr), results from a failure of the roof plate to develop. Dorsalization of the neural tube is consequently affected: dorsal interneurons in the spinal cord and granule neurons in the cerebellar cortex are lost, and the dorsal vertebral neural arches fail to form. Millonig et al. (2000) used positional cloning to identify the gene mutant in dreher and found that the Lim homeodomain protein Lmx1a is affected in 3 different alleles of dreher. Lmx1a is expressed in the roof plate along the neuraxis during development of the central nervous system and is required for the development of the roof plate and, in turn, for specification of dorsal cell fates in the central nervous system and developing vertebrae.

Steffes et al. (2012) reported that mice homozygous for either the spontaneous mutanlallemand (mtl) mutation or the spontaneous belly spot and deafness (bsd) mutation had similar phenotypes. Homozygotes exhibited circling, head bobbing, and hyperactivity, and were smaller with short tails and white belly patches compared with wildtype. Mutant mice lacked a Preyer reflex, had severe morphologic defects of inner ear, and were profoundly deaf. Heterozygous mice had normal hearing. Complementation tests suggested that both mtl and bsd were mutant alleles of the Lmx1a gene. The authors identified the mtl mutation as a point mutation in the 3-prime splice site of exon 4 of Lmx1a and the bsd mutation as a genomic deletion including exon 3 of Lmx1a. Quantitative RT-PCR analysis revealed that Lmx1a transcripts in both mtl and bsd mutants were significantly downregulated compared with wildtype.


REFERENCES

  1. Bergstrom, D. E., Gagnon, L. H., Eicher, E. M. Genetic and physical mapping of the Dreher locus on mouse chromosome 1. Genomics 59: 291-299, 1999. [PubMed: 10444330, related citations] [Full Text]

  2. Fagerheim, T., Nilssen, O., Raeymaekers, P., Brox, V., Moum, T., Elverland, H. H., Teig, E., Omland, H. H., Fostad, G. K., Tranebjaerg, L. Identification of a new locus for autosomal dominant non-syndromic hearing impairment (DFNA7) in a large Norwegian family. Hum. Molec. Genet. 5: 1187-1191, 1996. [PubMed: 8842739, related citations] [Full Text]

  3. Millonig, J. H., Millen, K. J., Hatten, M. E. The mouse Dreher gene Lmx1a controls formation of the roof plate in the vertebrate CNS. Nature 403: 764-769, 2000. [PubMed: 10693804, related citations] [Full Text]

  4. Steffes, G., Lorente-Canovas, B., Pearson, S., Brooker, R. H., Spiden, S., Kiernan, A. E., Guenet, J. L., Steel, K. P. Mutanlallemand (mtl) and belly spot and deafness (bsd) are two new mutations of Lmx1a causing severe cochlear and vestibular defects. PLoS One 7: e51065, 2012. Note: Electronic Article. [PubMed: 23226461, related citations] [Full Text]

  5. Wesdorp, M., de Koning Gans, P. A. M., Schraders, M., Oostrik, J., Huynen, M. A., Venselaar, H., Beynon, A. J., van Gaalen, J., Piai, V., Voermans, N., van Rossum, M. M., Hartel, B. P., and 14 others. Heterozygous missense variants of LMX1A lead to nonsyndromic hearing impairment and vestibular dysfunction. Hum. Genet. 137: 389-400, 2018. [PubMed: 29754270, related citations] [Full Text]


Contributors:
Cassandra L. Kniffin - updated : 02/11/2020
Creation Date:
Moyra Smith : 9/5/1996
carol : 04/02/2021
carol : 02/13/2020
carol : 02/12/2020
ckniffin : 02/11/2020
carol : 04/03/2012
terry : 12/2/2008
joanna : 3/18/2004
dkim : 10/12/1998
jenny : 6/3/1997
mark : 9/6/1996
mark : 9/6/1996

# 601412

DEAFNESS, AUTOSOMAL DOMINANT 7; DFNA7


ORPHA: 90635;   DO: 0110591;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
1q23.3 Deafness, autosomal dominant 7 601412 Autosomal dominant 3 LMX1A 600298

TEXT

A number sign (#) is used with this entry because of evidence that autosomal dominant deafness-7 (DFNA7) is caused by heterozygous mutation in the LMX1A gene (600298) on chromosome 1q22.


Description

Autosomal dominant deafness-7 (DFNA7) is a form of progressive sensorineural hearing loss with highly variable age at onset and severity, even within families. The age at onset ranges from congenital to mid-adulthood. Some patients may have associated vertigo (summary by Wesdorp et al., 2018).


Clinical Features

Fagerheim et al. (1996) described a large Norwegian family with autosomal dominant nonsyndromic progressive high-tone hearing loss. In the majority of affected family members examined with successive audiograms, the hearing loss was greater than 45 dB by age 15 years. Linkage analysis was performed in this family (see MAPPING), but additional genetic and DNA studies were not performed.

Wesdorp et al. (2018) reported 2 large unrelated families of Dutch origin in which 7 individuals had autosomal dominant nonsyndromic sensorineural hearing loss. The age at onset and the phenotype were highly variable, even within families. Two unrelated patients had onset at birth, 1 had childhood onset, 1 had onset at puberty, and 3 had onset between 26 and 35 years of age. The hearing loss, which was progressive for most patients, was mild to profound and associated with a downward sloping audiogram. Four patients had vestibular involvement with evidence of hyporeflexia manifest as vertigo and tinnitus; oculomotor testing was normal.


Inheritance

The transmission pattern of DFNA7 in the families reported by Wesdorp et al. (2018) was consistent with autosomal dominant inheritance.


Mapping

In a large Norwegian family with autosomal dominant nonsyndromic progressive high-tone hearing loss, Fagerheim et al. (1996) found linkage of the disorder to chromosome 1q21-q23. A maximum lod score of 7.65 at theta = 0 was obtained with the microsatellite marker D1S196. Fagerheim et al. (1996) reported that there are several candidate genes located in 1q21-q23, including LMX1A and POU2F1 (164175). They noted that the POU3F4 gene (300039) is involved in X-linked deafness (304400) and that the POU2F1 gene is located on chromosome 1 only 0.8-cM from the D1S196 marker which gave the highest lod score with DFNA7. They noted further that the POU genes encode a family of DNA-binding transcription factors with 3 domains in common. The POU2F1 gene was reported to be expressed in the cochlea during rat embryogenesis, consistent with its contribution to inner ear development.


Molecular Genetics

In affected members of 2 unrelated Dutch families with DFNA7, Wesdorp et al. (2018) identified heterozygous missense mutations at highly conserved residues in the LMX1A gene (V241L, 600298.0001 and C97S, 600298.0002). Functional studies of the variant and studies of patient cells were not performed, and the authors postulated haploinsufficiency as a pathogenetic mechanism. However, Wesdorp et al. (2018) noted that Lmx1a heterozygous mutant mice have normal hearing (see ANIMAL MODEL and Steffes et al., 2012), which is not supportive of haploinsufficiency as the disease mechanism.


Animal Model

Bergstrom et al. (1999) characterized the phenotype of the recessive 'dreher' (dr) mutant mouse, which was later demonstrated to be caused by mutation in the Lmx1a gene (Millonig et al., 2000). Mice homozygous for the dr allele have ataxic gait, circling behavior, impaired righting reflex, hyperactivity, inner ear defects, deafness, and pigmentation abnormalities. Other features include cerebellar hypoplasia, cerebellar foliation and lamination abnormalities, neocortical disruptions of neuronal migration, underdeveloped Mullerian duct derivatives, and skeletal and skull defects. Bergstrom et al. (1999) mapped the dr locus to chromosome 1 in a region that shows syntenic homology with human chromosome 1q21-q23.

In the vertebrate central nervous system, a cascade of signals that originates in the ectoderm adjacent to the neural tube is propagated by the roof plate to dorsalize the neural tube. Millonig et al. (2000) reported that the phenotype of a spontaneous neurologic mutant mouse, called 'dreher' (dr), results from a failure of the roof plate to develop. Dorsalization of the neural tube is consequently affected: dorsal interneurons in the spinal cord and granule neurons in the cerebellar cortex are lost, and the dorsal vertebral neural arches fail to form. Millonig et al. (2000) used positional cloning to identify the gene mutant in dreher and found that the Lim homeodomain protein Lmx1a is affected in 3 different alleles of dreher. Lmx1a is expressed in the roof plate along the neuraxis during development of the central nervous system and is required for the development of the roof plate and, in turn, for specification of dorsal cell fates in the central nervous system and developing vertebrae.

Steffes et al. (2012) reported that mice homozygous for either the spontaneous mutanlallemand (mtl) mutation or the spontaneous belly spot and deafness (bsd) mutation had similar phenotypes. Homozygotes exhibited circling, head bobbing, and hyperactivity, and were smaller with short tails and white belly patches compared with wildtype. Mutant mice lacked a Preyer reflex, had severe morphologic defects of inner ear, and were profoundly deaf. Heterozygous mice had normal hearing. Complementation tests suggested that both mtl and bsd were mutant alleles of the Lmx1a gene. The authors identified the mtl mutation as a point mutation in the 3-prime splice site of exon 4 of Lmx1a and the bsd mutation as a genomic deletion including exon 3 of Lmx1a. Quantitative RT-PCR analysis revealed that Lmx1a transcripts in both mtl and bsd mutants were significantly downregulated compared with wildtype.


REFERENCES

  1. Bergstrom, D. E., Gagnon, L. H., Eicher, E. M. Genetic and physical mapping of the Dreher locus on mouse chromosome 1. Genomics 59: 291-299, 1999. [PubMed: 10444330] [Full Text: https://doi.org/10.1006/geno.1999.5873]

  2. Fagerheim, T., Nilssen, O., Raeymaekers, P., Brox, V., Moum, T., Elverland, H. H., Teig, E., Omland, H. H., Fostad, G. K., Tranebjaerg, L. Identification of a new locus for autosomal dominant non-syndromic hearing impairment (DFNA7) in a large Norwegian family. Hum. Molec. Genet. 5: 1187-1191, 1996. [PubMed: 8842739] [Full Text: https://doi.org/10.1093/hmg/5.8.1187]

  3. Millonig, J. H., Millen, K. J., Hatten, M. E. The mouse Dreher gene Lmx1a controls formation of the roof plate in the vertebrate CNS. Nature 403: 764-769, 2000. [PubMed: 10693804] [Full Text: https://doi.org/10.1038/35001573]

  4. Steffes, G., Lorente-Canovas, B., Pearson, S., Brooker, R. H., Spiden, S., Kiernan, A. E., Guenet, J. L., Steel, K. P. Mutanlallemand (mtl) and belly spot and deafness (bsd) are two new mutations of Lmx1a causing severe cochlear and vestibular defects. PLoS One 7: e51065, 2012. Note: Electronic Article. [PubMed: 23226461] [Full Text: https://doi.org/10.1371/journal.pone.0051065]

  5. Wesdorp, M., de Koning Gans, P. A. M., Schraders, M., Oostrik, J., Huynen, M. A., Venselaar, H., Beynon, A. J., van Gaalen, J., Piai, V., Voermans, N., van Rossum, M. M., Hartel, B. P., and 14 others. Heterozygous missense variants of LMX1A lead to nonsyndromic hearing impairment and vestibular dysfunction. Hum. Genet. 137: 389-400, 2018. [PubMed: 29754270] [Full Text: https://doi.org/10.1007/s00439-018-1880-5]


Contributors:
Cassandra L. Kniffin - updated : 02/11/2020

Creation Date:
Moyra Smith : 9/5/1996

Edit History:
carol : 04/02/2021
carol : 02/13/2020
carol : 02/12/2020
ckniffin : 02/11/2020
carol : 04/03/2012
terry : 12/2/2008
joanna : 3/18/2004
dkim : 10/12/1998
jenny : 6/3/1997
mark : 9/6/1996
mark : 9/6/1996