Таб I.1
Таб I.1 dna_b Параметры, используемые в различных моделях гибкости ДНК
| I. Модель тримеров | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| (а)
Модель нуклеосомного позиционирования
(Satchwell, Drew & Travers) Tilt=00; Twist =34,30 (10,5 пар оснований/виток) |
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| Roll: | 2-е основание | G | A | |||||||
| 3-е основание | A | G | C | T | A | G | C | T | ||
| 1-е основание | A | 3.30 | 5.40 | 7.50 | 5.80 | 0.00 | 5.20 | 3.70 | 0.70 | |
| G | 3.80 | 6.00 | 10.00 | 5.40 | 3.00 | 5.40 | 5.40 | 5.30 | ||
| C | 8.30 | 4.70 | 7.50 | 5.40 | 3.30 | 4.20 | 6.50 | 6.70 | ||
| T | 5.40 | 5.40 | 6.00 | 5.20 | 2.00 | 2.20 | 3.70 | 2.80 | ||
| II. Димерные модели | ||||||||||
| Тип динуклеотида | пурин-пурин | пурин-пиримидин | пиримидин-пурин | |||||||
| динуклеотид | AA | GA | AG | GG | AT | AC | GC | TA | CA | CG |
| (б) Calladine, Drew & McCall Model | ||||||||||
| roll | 00 | 3.30 | 3.30 | 3.30 | 3.30 | 3.30 | 3.30 | 6.60 | 3.30 | 3.30 |
| tilt | 00 | 00 | 00 | 00 | 00 | 00 | 00 | 00 | 00 | 00 |
| twist | 350 | 340 | 340 | 340 | 340 | 340 | 340 | 340 | 340 | 340 |
| (в) Bolshoi, McNamara, Harringtton & Trifonov Model | ||||||||||
| roll | -6.50 | -2.70 | 8.40 | 1.20 | 2.60 | -0.90 | -0.50 | 0.90 | 1.60 | 6.70 |
| tilt | 3.20 | -4.60 | -0.30 | -1.80 | 00 | -0.70 | 00 | 00 | 3.10 | 00 |
| twist | 35.620 | 36.900 | 27.700 | 33.670 | 31.500 | 34.400 | 40.000 | 36.000 | 34.500 | 29.800 |
| (г) Caccione, De Santis, Foti, Palleschi & Savino Model | ||||||||||
| roll | -5.40 | 2.00 | 1.00 | 1.30 | -7.30 | -2.40 | -3.70 | 8.00 | 6.70 | 4.60 |
| tilt | -0.50 | -1.70 | -1.60 | -0.60 | 00 | -2.70 | 00 | 00 | 0.40 | 00 |
| twist | 35.90 | 35.80 | 35.60 | 33.00 | 35.00 | 34.60 | 33.30 | 34.60 | 34.50 | 33.70 |
| (д) Koo & Crothers Model | ||||||||||
| roll | 00 | 5.80 | 00 | 00 | 00 | 00 | 00 | 11.60 | 5.80 | 00 |
| tilt | 00 | -9.60 | 12.00 | 00 | 00 | 12.00 | 00 | 00 | -9.60 | 00 |
| twist | 34.30 | 34.30 | 34.30 | 34.30 | 34.30 | 34.30 | 34.30 | 34.30 | 34.30 | 34.30 |
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